Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0041 ATGGCATCTACTTCGGATCCATGGGTAAAGGAATACAATGAAGCAGTAAAGCTTTCTGATGATATCAATGGCATGATTTCCGAGAGGAGTTCCTTTGCGTCCTCTGGGCCAGAAGCACAGCGCCATGCCTCTGCTATACGGAGGAAGATCACAATTTTGGGGACTAGACTTGATAGTTTACAAGGCCTTTTGACCAGGCTTCCTGGAAAGCAACCAAAGTCGGAGAAAGAGATGAATCGGCGAAAGGACGCACTTGCAAATTTGAGATCAAAAGCTAATCAGATGGCTTCTGCCTTGAACATGTCAAATTTTGCGAACCGAGACAGCTTGCTTGGCGAAATTAAGCCAGCTGATGCCATGAGCAGAACAGCTGGGCTGGACAACCAGGGTGTTGTTGGTCTCCAACGACAAATTATGAGAGAGCAAGATGAAGGCCTTGAGAAGCTCGAGGAGACAGTCATAAGTACAAAACATATTGCATTTGCTGTCAATGAAGAACTTGACCTTCACACGAGATTAATTGATGACTTGGACCAACGCGTTGATGTTACAGACTCTCGATTAAGGAGAGTACAGAAGAACTTGGCAATTTTGAACAAACGCACCAAGGGTGGTTGCTCTTGCATGTGCATGCTCCTATCAATCCTCGGGATAGTGGCTTTAGCTGCTGTCATATTCCTACTCATCAAATATTTGTAA 699 44.92 MASTSDPWVKEYNEAVKLSDDINGMISERSSFASSGPEAQRHASAIRRKITILGTRLDSLQGLLTRLPGKQPKSEKEMNRRKDALANLRSKANQMASALNMSNFANRDSLLGEIKPADAMSRTAGLDNQGVVGLQRQIMREQDEGLEKLEETVISTKHIAFAVNEELDLHTRLIDDLDQRVDVTDSRLRRVQKNLAILNKRTKGGCSCMCMLLSILGIVALAAVIFLLIKYL 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 250828 252855 - Conep06aG0004100.1 Cone6ag0041 438925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0041 232 PANTHER SYNTAXIN 11 215 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cone6ag0041 232 Pfam SNARE domain 173 222 IPR000727 -
Cone6ag0041 232 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 136 198 IPR000727 -
Cone6ag0041 232 FunFam syntaxin-51 isoform X2 138 200 - -
Cone6ag0041 232 SUPERFAMILY SNARE fusion complex 127 197 - -
Cone6ag0041 232 Gene3D - 138 200 - -
Cone6ag0041 232 CDD SNARE_Qc 139 196 - -
Cone6ag0041 232 Coils Coil 174 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1185 Cone-Chr14:9681715 Cone6ag0041 Cone-Chr6:250828 2.49E-88 wgd
Cone15ag1202 Cone-Chr15:9586818 Cone6ag0041 Cone-Chr6:250828 4.66E-100 wgd
Cone6ag0041 Cone-Chr6:250828 Cone9ag0047 Cone-Chr9:243349 2.91E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0041 K08503 - cit:102608030 389.037