Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0050 ATGGACGAAGTATTCACGGCCGCCGATTCGTCTCTGAATGTCCGATCGGCGTCGTTACAGCCGTCAATTCTCCCTTCCAATCTTCCCATCCTCACTGCCTTGTTCTCCTTTGCTCTCGCCCAGTTTCTCAAGCTCTTCACTACTTGGTACAAAGAAAAAAGATGGGATTCAAAAAGGATGCTTGGGTCAGGTGGAATGCCCTCCTCACATTCAGCAACCGTAACGTCTCTTGCTGTGGCTATTGGCTTACAGGAAGGAACTGGGGGGCCCGCATTTGCACTTGCTGTGGTTCTGGCATGTGTTGTGATGTATGATGCTACTGGTGTAAGACTCCATGCTGGTCGCCAAGCAGAACTATTGAATCAGATAGTATGTGAGTTGCCTCCTGAACACCCTGTATCTAATGTTAGACCCCTGCGAGATTCACTTGGTCATACTCCACTTCAGGTCTTGGCAGGTGCTTTGTTGGGATGTATAATTGCATTGCTCATGAGAAGTTCCAGTTAG 507 48.52 MDEVFTAADSSLNVRSASLQPSILPSNLPILTALFSFALAQFLKLFTTWYKEKRWDSKRMLGSGGMPSSHSATVTSLAVAIGLQEGTGGPAFALAVVLACVVMYDATGVRLHAGRQAELLNQIVCELPPEHPVSNVRPLRDSLGHTPLQVLAGALLGCIIALLMRSSS 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 284609 286644 + Conep06aG0005000.1 Cone6ag0050 438934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0050 168 PANTHER ACID PHOSPHATASE/VANADIUM-DEPENDENT HALOPEROXIDASE-RELATED PROTEIN 19 167 IPR003832 -
Cone6ag0050 168 Pfam Divergent PAP2 family 27 160 IPR003832 -
Cone6ag0050 168 CDD PAP2_like 30 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0050 K09775 - - mdm:103418981 271.166
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1272 Cone-Chr10:9771741 Cone6ag0050 Cone-Chr6:284609 1.06E-76 dispersed
Cone12ag0702 Cone-Chr12:6455625 Cone6ag0050 Cone-Chr6:284609 1.99E-64 dispersed
Cone13ag1133 Cone-Chr13:8989873 Cone6ag0050 Cone-Chr6:284609 5.93E-65 dispersed
Cone18ag1015 Cone-Chr18:7515342 Cone6ag0050 Cone-Chr6:284609 4.41E-35 dispersed
Cone19ag1112 Cone-Chr19:8015819 Cone6ag0050 Cone-Chr6:284609 8.41E-65 dispersed
Cone3ag1322 Cone-Chr3:32169554 Cone6ag0050 Cone-Chr6:284609 5.28E-47 dispersed
Cone6ag0050 Cone-Chr6:284609 Cone9ag0060 Cone-Chr9:285296 9.04E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g555 Blo03g00547 Blo03g01456 Bda07g00374 Bda09g00405 . Bpe08g01116 . . Cmo16g00939 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0050 Cone9ag0060 . . . . . . . . . . Bpe11g00559 . Bma07g01287 Bma14g00327 . . . . Cma16g00904 . Car16g00879 Cpe14g00721 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000740 5 3 3 4 4 2 3 2 3 2 2 2 2 2 2 3 2 7 5 3 2 3 3 2 2 2 2 9 4 3 93