Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0052 ATGATCATGACGAGATACAACTTTTCTTCTACCACCGCTCTGGTGATCATCATCATCATCTTCTTCTTCTCTTCCTCTCTTCTCTTCACTTCCATCAATGCTGATCGCGTCCATCTCCATGGATGTACCAACGAGTTTCGAACCTACAGCAAGAAAAAGAACTTCACTAACTGTCAAAAACTCCCTGCTCTTAACGCTGACTTCGCTTGGAACTTAAACAAAAACGATCAGGAAACGCCCGACAAAGTAAGACTCGACATAATGTTCGGCGCAAAACTAGATAACGAAATGGGATGGTTAGCCATTGGGGTTAACCCGGTGAGAGCACAAATGGTGGGAACAAGAGCCGTCATGGGGATCAAATTCGCCAACGGCACAATGGCAGGGCAGCGTTACAACATCACACAGGACACCAAGCTAGGTTGTCGTCTTTTGCCTTCCACAGTTGATGAAGTGCAGAACATGTCGTTCAGATACGATGCGTACACGGAATATTACATGATCAATGCCACCCTTGTTCTTCCAACTTCGATGTACAATATCTCAAGCTTAAACCTTGTTTGGCAAATTGGCTACGACGTGGATGGCGACGAGCCCAAGCAGCATCCAGCTACTTTACAAAACGTCGATAGTACGGAGACCATTGATCTGATTACAGAGAGAGCTCATTCTACTGTCGGAACCCACCGACGACATATGCGAAAAGTGCATGGGATTCTGAACATAATAGGGTGGGGCGGATTTTTGCCGATAGGGGTGATCATCGCGAGGTATTTGAAAAAATTCCCAGTAAAGTTAGATCCAGCATGGTATTATTTACACGTATCGTGTCAGATCATTGGATATTTTCTGGGCACAATCGGTTGGGCATTTGGTTTATGGCTCGGACATGTTTCGCCATACTATAGCTTTCCCACACATCGTCTCTTCGCCATATTCATATTCACATTCACAACATTACAGATGCTTGCGTTACGTTTAAGACCAGATGCGAGTGACGAGTACAGGAAATACTGGGATATGTATCATCATTTTCTGGGTTATGCGTTGCTTGTGGTGATTGGGATCAATATCTTCGAAGGGATCAAAATCTTGAAGCCTTACAATCACGATTGGAAATGGGGTTACATTGGCTTGCTTGTGGGTGTAGCGATGGTTTTCTTGACGTTTGAGTTAGTCACGTGGGTTATGTTTTATAGAACAAAAAGATCGAGCAAAAATGGAGGGAAAACAGTTCCATCTAACGAACCAGCAAAAAAGTCAAATGCCAGTTCTAATACTAATAAGATTGAAAACGATAAAGACTCAACCAAAAAGAGAGATGATAAGCCAGCTTCTTCTTCAAATCCAACTCGAGATAGGTCCAAGTGA 1371 43.4 MIMTRYNFSSTTALVIIIIIFFFSSSLLFTSINADRVHLHGCTNEFRTYSKKKNFTNCQKLPALNADFAWNLNKNDQETPDKVRLDIMFGAKLDNEMGWLAIGVNPVRAQMVGTRAVMGIKFANGTMAGQRYNITQDTKLGCRLLPSTVDEVQNMSFRYDAYTEYYMINATLVLPTSMYNISSLNLVWQIGYDVDGDEPKQHPATLQNVDSTETIDLITERAHSTVGTHRRHMRKVHGILNIIGWGGFLPIGVIIARYLKKFPVKLDPAWYYLHVSCQIIGYFLGTIGWAFGLWLGHVSPYYSFPTHRLFAIFIFTFTTLQMLALRLRPDASDEYRKYWDMYHHFLGYALLVVIGINIFEGIKILKPYNHDWKWGYIGLLVGVAMVFLTFELVTWVMFYRTKRSSKNGGKTVPSNEPAKKSNASSNTNKIENDKDSTKKRDDKPASSSNPTRDRSK 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 295695 297252 - Conep06aG0005200.1 Cone6ag0052 438936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0052 456 CDD Cyt_b561_FRRS1_like 210 392 - -
Cone6ag0052 456 MobiDBLite consensus disorder prediction 431 456 - -
Cone6ag0052 456 PIRSF UCP037471 12 427 IPR017214 -
Cone6ag0052 456 MobiDBLite consensus disorder prediction 404 430 - -
Cone6ag0052 456 Gene3D - 215 407 - -
Cone6ag0052 456 Pfam Protein of unknown function (DUF568) 111 217 IPR045265 -
Cone6ag0052 456 ProSiteProfiles DOMON domain profile. 64 191 IPR005018 -
Cone6ag0052 456 ProSiteProfiles Cytochrome b561 domain profile. 205 399 IPR006593 -
Cone6ag0052 456 SMART 561_7 236 362 IPR006593 -
Cone6ag0052 456 MobiDBLite consensus disorder prediction 404 456 - -
Cone6ag0052 456 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 17 403 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0052 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0052 Cone-Chr6:295695 Cone7ag0915 Cone-Chr7:7175668 5.57E-65 dispersed
Cone6ag0052 Cone-Chr6:295695 Cone9ag0062 Cone-Chr9:290263 1.20E-244 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g546 . . Bda07g00372 . Bpe09g00163 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0052 Cone9ag0062 . . . . . . . Blo10g00842 . . Bpe11g00557 . . Bma14g00329 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011685 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 30