Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone6ag0055 | ATGTGGATACCAGCAAATTCTTCACCTTTGGATACATCTTCACTCTCCTTTCGACTTCACCAAAACCCTCTTTCCATCTCCTCTCCCGTTACATTTCCGAAGAAGCCTTTTTCCCACGCTTCCCCAGTTCACTGCGGCCTTCGCGAGCTCCGAGTGCGGATCGATTCCGTGAAGAACACGCAGAAAATCACCGAAGCCATGAAGCTCGTCGCCGCCGCAAGAGTCCGTCGAGCACAGGAGGCAGTTATCAATGGCAGACCCTTCGCAGAGACCCTTGTAGAAGTCGTTTACAGCATCAACGAACACCTTCGAGAAGATTTAGTAGATATTCCATTAACAAGTATCCGTCCTGTTAAGAAAATCGCCCTTGTGGTGATCACCGGCGATCGAGGCCTTTGTGGCGGTTTCAACAACGCGGTGATCAAGAAAACAGAGACTCGAATAGCTGAATTGAAGAATCTCGGCTTGGATTACACTCTGATTAGTGTTGGTAAGAAGGGGAACTCTTATTTTAAGCGTAGACCTAATATTCCAGTAGATAGCTTCATTGAAGGAGAAACATTTCCTACTGCAAAAGAAGCTCAAAGGATTGCAGACATTGTTTTTGCACTATTTATTAGTGAAGATGTTGATAAGGTCGAATTGATTTATACCAAGTTCGTCTCCTTGGTTAAATCCGATCCTGTGATTCATACATTGCTTCCATTATCTCCAAAAGGGGGAATTCTTGACGTGAATGGCAATTGTGTTGATGTGATGGAAGATGAGTTTTTTAGGCTGACTACCAAGGAAGGGAAGTTGGATGTAGAGAGGGAAAGTGTGAGGACAACGAAGAAGGAGAAGGGAGAGGCTTTCTCACCATTGCTGCAATTCGAGCAGGATCCGGTTCAAATTCTTGATGCAATGATGCCTTTGTACTTGAACAGTCAGATTTTGAGAGCATTACAGGAATCAATTGCGAGTGAGTTAGCTTCAAGGATGAGTGCTATGAGTAATGCAACTGATAATGCAGATGAATTGAAGAAATCCCTTTCTACTGTTTACAATCGGCAAAGACAGGCAAAAATTACGGGCGAGATTTTGGAGATTGTTGCTGGAGCTGAGGCATTATCAGAGTTTAATTAG | 1125 | 43.91 | MWIPANSSPLDTSSLSFRLHQNPLSISSPVTFPKKPFSHASPVHCGLRELRVRIDSVKNTQKITEAMKLVAAARVRRAQEAVINGRPFAETLVEVVYSINEHLREDLVDIPLTSIRPVKKIALVVITGDRGLCGGFNNAVIKKTETRIAELKNLGLDYTLISVGKKGNSYFKRRPNIPVDSFIEGETFPTAKEAQRIADIVFALFISEDVDKVELIYTKFVSLVKSDPVIHTLLPLSPKGGILDVNGNCVDVMEDEFFRLTTKEGKLDVERESVRTTKKEKGEAFSPLLQFEQDPVQILDAMMPLYLNSQILRALQESIASELASRMSAMSNATDNADELKKSLSTVYNRQRQAKITGEILEIVAGAEALSEFN | 374 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 304524 | 305648 | - | Conep06aG0005500.1 | Cone6ag0055 | 438939 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone6ag0055 | 374 | FunFam | ATP synthase gamma chain, chloroplastic | 45 | 112 | - | - | |
| Cone6ag0055 | 374 | Gene3D | - | 111 | 237 | - | - | |
| Cone6ag0055 | 374 | FunFam | ATP synthase gamma chain, chloroplastic | 114 | 237 | - | - | |
| Cone6ag0055 | 374 | PRINTS | ATP synthase gamma subunit signature | 118 | 137 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cone6ag0055 | 374 | PRINTS | ATP synthase gamma subunit signature | 211 | 228 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cone6ag0055 | 374 | PRINTS | ATP synthase gamma subunit signature | 317 | 336 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cone6ag0055 | 374 | PRINTS | ATP synthase gamma subunit signature | 348 | 369 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cone6ag0055 | 374 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 260 | 370 | - | - | |
| Cone6ag0055 | 374 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 45 | 110 | - | - | |
| Cone6ag0055 | 374 | NCBIfam | ATP synthase F1 subunit gamma | 46 | 370 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cone6ag0055 | 374 | Pfam | ATP synthase | 47 | 370 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cone6ag0055 | 374 | FunFam | ATP synthase gamma chain, chloroplastic | 263 | 370 | - | - | |
| Cone6ag0055 | 374 | ProSitePatterns | ATP synthase gamma subunit signature. | 356 | 369 | IPR023632 | - | |
| Cone6ag0055 | 374 | CDD | F1-ATPase_gamma | 47 | 367 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cone6ag0055 | 374 | Hamap | ATP synthase gamma chain [atpG]. | 44 | 370 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cone6ag0055 | 374 | PANTHER | ATP SYNTHASE GAMMA CHAIN | 1 | 370 | IPR000131 | GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)|GO:0046933(PANTHER) | |
| Cone6ag0055 | 374 | SUPERFAMILY | ATP synthase (F1-ATPase), gamma subunit | 48 | 370 | IPR035968 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone2ag0804 | Cone-Chr2:34047874 | Cone6ag0055 | Cone-Chr6:304524 | 1.70E-11 | dispersed | |
| Cone6ag0055 | Cone-Chr6:304524 | Cone6ag1091 | Cone-Chr6:6652794 | 6.96E-183 | wgd | |
| Cone6ag0055 | Cone-Chr6:304524 | Cone9ag0067 | Cone-Chr9:316838 | 7.90E-162 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone6ag0055 | K02115 | - | csv:101214408 | 539.65 |