Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0064 ATGAACCAGGTTATTCCTTCTGACCAGCAGGCTCAGCAGTATCACCAACAGCACCCTGCAGCGCAGCAGTGGATGATGATGCCGCATCAGCAGCAACAGCCTCAGCCGATTCCACCACCAGCCGGATGGACCCCGCAGGCAGTACCTCCACCTATCCACGCTCAGCAGTATTCAGCTGCTCCAACTGGATCCGACGAGATCCGGTCACTATGGATCGGTGACTTGCAGCAGTGGATGGATGAGAGCTATCTCACCAACTGCTTCTCTCAGACCGGCGAGGTAGTTACAGCTAAGGTTATTCGCAATAAGCAAACCAGCATGCCAGAAGGTTATGGTTTCATTGAGTTTGTCAGTCATGCTGCTGCAGAGCGGATATTACAAACGTTTAACGGGACATTGATGCCAAACTCTGAGCAGAATTTTCGACTTAACTGGGCCACTCTTGGTGCCGGTGAGAGGCGTCAAGATGATGGCTCAGACTATACAATTTTCGTTGGAGATTTGGCTGGTGATGTCACTGATTATACTCTTCAGGAAACGTTTAAGAGTCTGTACCAGTCTGTGAAGGGTGCAAAGGTTGTAACAGACAGGACCACTGGGCGTTCTAAAGGTTATGGATTTGTCAGGTTTGCTGATGAAAATGAACAATTGAGGGCTCTGACTGAGATGAATGGTATGTATTGTTCTTCAAGGCCCATGCGTGTTGGAGCGGCTGCCAATAAAAAACCTGTTGGAGGACAACAATATCAAACAGGCACATACCAGAATACTCAGGGAAATCAAGGGGAGGATGATCCAAACAATACAACAATTTTTGTTGGGGGTCTGGATACCAGTGTCACAGATGATATATTGAGACAAGTTTTTGGCCAATTCGGAGAGCTTGTTCATGTGAAAATTCCTATGGGAAAGCGATGTGGCTTTGTTCAGTTTGCAAACAGACCCTGTGCAGAGCAAGCATTGTCAATGTTGAATGGCACACAACTGGGAGGACAAAATGTCCGTCTTTCATGGGGGCGTAGTCCATCAAACAAACAGGCCCAGCCAGATCAGTCCCAGTGGAATGGTGGTGGATTCTATGGCTACCCACAACAAGGATATGATTCATATGCATATGCCCCAAATCACCAAGACCCGAACATGTATTATGGAGGGTACCCTGGCTATGGCAATTTCCAGCAGCCTGGTGCATACCAACACCCGCCACCACAGTGA 1215 48.15 MNQVIPSDQQAQQYHQQHPAAQQWMMMPHQQQQPQPIPPPAGWTPQAVPPPIHAQQYSAAPTGSDEIRSLWIGDLQQWMDESYLTNCFSQTGEVVTAKVIRNKQTSMPEGYGFIEFVSHAAAERILQTFNGTLMPNSEQNFRLNWATLGAGERRQDDGSDYTIFVGDLAGDVTDYTLQETFKSLYQSVKGAKVVTDRTTGRSKGYGFVRFADENEQLRALTEMNGMYCSSRPMRVGAAANKKPVGGQQYQTGTYQNTQGNQGEDDPNNTTIFVGGLDTSVTDDILRQVFGQFGELVHVKIPMGKRCGFVQFANRPCAEQALSMLNGTQLGGQNVRLSWGRSPSNKQAQPDQSQWNGGGFYGYPQQGYDSYAYAPNHQDPNMYYGGYPGYGNFQQPGAYQHPPPQ 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 343548 347268 + Conep06aG0006400.1 Cone6ag0064 438948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0064 404 FunFam Polyadenylate-binding protein RBP45C 153 245 - -
Cone6ag0064 404 MobiDBLite consensus disorder prediction 1 31 - -
Cone6ag0064 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 240 IPR000504 GO:0003723(InterPro)
Cone6ag0064 404 MobiDBLite consensus disorder prediction 338 358 - -
Cone6ag0064 404 Gene3D - 250 351 IPR012677 -
Cone6ag0064 404 Gene3D - 149 249 IPR012677 -
Cone6ag0064 404 FunFam Polyadenylate-binding protein RBP45C 246 351 - -
Cone6ag0064 404 SUPERFAMILY RNA-binding domain, RBD 150 258 IPR035979 GO:0003676(InterPro)
Cone6ag0064 404 MobiDBLite consensus disorder prediction 1 37 - -
Cone6ag0064 404 SMART rrm1_1 69 144 IPR000504 GO:0003723(InterPro)
Cone6ag0064 404 SMART rrm1_1 270 337 IPR000504 GO:0003723(InterPro)
Cone6ag0064 404 SMART rrm1_1 162 236 IPR000504 GO:0003723(InterPro)
Cone6ag0064 404 SUPERFAMILY RNA-binding domain, RBD 31 147 IPR035979 GO:0003676(InterPro)
Cone6ag0064 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 148 IPR000504 GO:0003723(InterPro)
Cone6ag0064 404 SUPERFAMILY RNA-binding domain, RBD 257 366 IPR035979 GO:0003676(InterPro)
Cone6ag0064 404 Gene3D - 67 147 IPR012677 -
Cone6ag0064 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 341 IPR000504 GO:0003723(InterPro)
Cone6ag0064 404 Pfam RNA recognition motif 163 233 IPR000504 GO:0003723(InterPro)
Cone6ag0064 404 Pfam RNA recognition motif 70 137 IPR000504 GO:0003723(InterPro)
Cone6ag0064 404 Pfam RNA recognition motif 271 334 IPR000504 GO:0003723(InterPro)
Cone6ag0064 404 CDD RRM2_SECp43_like 160 239 - -
Cone6ag0064 404 CDD RRM1_SECp43_like 69 147 - -
Cone6ag0064 404 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 29 345 IPR050825 GO:0003729(PANTHER)|GO:0003729(InterPro)|GO:0005829(PANTHER)
Cone6ag0064 404 FunFam Polyadenylate-binding protein RBP45 5 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0064 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1139 Cone-Chr14:9445105 Cone6ag0064 Cone-Chr6:343548 9.50E-211 dispersed
Cone15ag1157 Cone-Chr15:9359542 Cone6ag0064 Cone-Chr6:343548 5.88E-215 dispersed
Cone1ag0444 Cone-Chr1:4020141 Cone6ag0064 Cone-Chr6:343548 4.68E-131 dispersed
Cone4ag1559 Cone-Chr4:11979327 Cone6ag0064 Cone-Chr6:343548 5.15E-129 dispersed
Cone5ag1439 Cone-Chr5:9253045 Cone6ag0064 Cone-Chr6:343548 2.88E-132 dispersed
Cone6ag0064 Cone-Chr6:343548 Cone9ag1069 Cone-Chr9:6013257 6.97E-167 dispersed
Cone6ag0064 Cone-Chr6:343548 Cone6ag1084 Cone-Chr6:6571176 1.08E-169 wgd
Cone6ag0064 Cone-Chr6:343548 Cone9ag0078 Cone-Chr9:347050 3.45E-263 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g447 Blo02g00819 . Bda06g01045 . . . . Bma12g00469 . . Cma02g00443 Cma20g00892 Car02g00300 Car20g00769 . . . . . . . . . . . . . . . . . Cone6ag0064 Cone9ag0078 Cone14ag1139 Cone15ag1157 Lsi10g00304 . Chy11g00443 . . . . . . . . . . Cmo02g00452 Cmo20g00899 . . . . . Cpe05g01219 . . . . . . . Cla09g01707 Cam09g1803 Cec09g1863 Cco09g1956 . . Cre01g0704 . Csa02g01195 . Cme11g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002064 4 5 3 6 2 2 0 1 1 0 0 2 2 2 2 3 2 6 1 2 1 2 2 2 1 2 2 3 2 2 65