Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0084 ATGTCAAGCAAAAAATTTGACAGACAACTCCACATACCATTGTTATTGTTGTCACTGTTGTTGATAAAACATGTTAAGGTTTGTCATGGACAAGACGATTCTTTTGGATCTTCTACTCCTTCCGATGGCGACTCAGAGCCGGCAGCCCCACCACCGCAACAGAATAACTGTAATGGAATATTCATGTCGTACACATTCATTTCAAGGGAAAAGCTCTACCCCCACATAAAAAATGTCTCGGCTCAGGCTTGGGGGTTCGAGTCTGAGGCTACAATAGTAAATACAGGGACCAGAGAATTGAAGCAATGGAAGATGTTCATAGGGTTCCAACACCGTGAGTTGTTGGTCTCGGCAAGTGGGGCCGTCACAACGGATGGTGGAGATTTTCCAACCCCAGTTGGAAACGGGACCACCTTGGCTGGGTATCCAATGGTTGATTTAAAGACAGCTATCGACACTGCAGGTGATTTCACACAAATTTCGACCAAAATTGAGTTTAAGGGAACGCAATTTGGACTGTCACCGAAGGCTACACCTATGCCCAGGACGATTCGCCTTGCTAATGACGGCTATAAGTGCCCTGCACCAACTAGACGAGGGAAAAACACAATGATGGTATGTTGTATTGTGGATCCAAAGTACAAGATGAATGATACCAAGAAGACAAAGTATTTCCCAAAGCAAAATGGAGATCTCTCTCTAATGTATGACATTCTTGAATCATATGGAAACAACTATCTAGCCCAAGTAACCATAGACAATAACAACCCATTAGGCCGTCTAGACCGTTGGAATTTAACTTGGGAATGGATGAGAGGAGAGTTCATTCAGACCATGAGAGGAGCTTACACTCGCAAAAAGGACATATCTGAATGTATTTTTGGCCTAGCTGGTCAGTACTTCAAAGACATGGATTTCTCACAAGTAATGAGCTGCGAGAAGAACCCCATAATTGGCGATCTGCCACCCGATCGCGCGAATGACACAAAGATCGGGAAAATACCTTACTGCTGTAGAAATGGTAGTGTCTTGCCAACAGTCATGGACCCGAGCAAAGCAAGGTCCATCTTCCAGTTACAAGTCTTTAAGCTTCCGCCCGATCAAAACCGAACCGCTCTAACCCCACCTCAGAAATGGAAAGTGGATGGTGCTATCAATCCCAATTATAAATGCGGCCCACCACTCCGCGTTGAGCCAACGGTTTTCCCAGACCCCAGTGGGCTCCAAGCTACTTCAAATTCAATTGCCAGCTGGCAGGTCATATGTAACATTACTCGCCCGAAAGAGAGACAAAATAGATGTTGCGTTTCCTACACTGCATACAATAGTGATACTGTGATTCCTTGTCCAACTTGTGCCTGTGGCTGTGAGAACACTGATAACTGTAATCCAGATGCTAAAGCAATGCACCTTCCTCCAGAAGCACTTCTTGTTCCTTTTGAGAACAGAACAGCAAAGGCGAAAGCTTGGGCCGAGCTGAAGAAGAAACCGATCCCAAAAAAGTTACCTTGTTCTGATAATTGCGGAGTTAGTATTAACTGGCACCTTCAGTCTGATTACACGACAGGATGGGCAGCAAAGATGACAATTTTCAACTGGCTAGATGAACCTTTCGTGGATTGGTTTACTGTGGTTGAATTGAAAAATGCAGGTGATGGGTTTGATAAGGTGTATTCCTTTAACGGGACCAAGTTGCCTAAGAACGATATGGCCGTGTTATTTCAAGGATTGAAGTATGATAACTACTTAGTGGCTATTAAAAATGCGAGTAACCCTGAGAAAAGTCCGAAGATTCCGGGAAAGCAGCAGTCTGTGATTTCTTTCAAGAAGAAAAAGCTGCATGGTCTTAACATTAGAAAAGGTGATGGATTCCCTTCAAAGTTGTATTTCAACGGGGAACAGTGTGCTTTGCCTTCAGAATTACCCCTGGAAAATGAAGGCCATAGGACTGGAATCATATCATACTTCACGGTTATAGTTGTTGCATTTTTCACTTTCTTGCTCACAATGGATCTGTTTCATTGGTGA 2028 43.84 MSSKKFDRQLHIPLLLLSLLLIKHVKVCHGQDDSFGSSTPSDGDSEPAAPPPQQNNCNGIFMSYTFISREKLYPHIKNVSAQAWGFESEATIVNTGTRELKQWKMFIGFQHRELLVSASGAVTTDGGDFPTPVGNGTTLAGYPMVDLKTAIDTAGDFTQISTKIEFKGTQFGLSPKATPMPRTIRLANDGYKCPAPTRRGKNTMMVCCIVDPKYKMNDTKKTKYFPKQNGDLSLMYDILESYGNNYLAQVTIDNNNPLGRLDRWNLTWEWMRGEFIQTMRGAYTRKKDISECIFGLAGQYFKDMDFSQVMSCEKNPIIGDLPPDRANDTKIGKIPYCCRNGSVLPTVMDPSKARSIFQLQVFKLPPDQNRTALTPPQKWKVDGAINPNYKCGPPLRVEPTVFPDPSGLQATSNSIASWQVICNITRPKERQNRCCVSYTAYNSDTVIPCPTCACGCENTDNCNPDAKAMHLPPEALLVPFENRTAKAKAWAELKKKPIPKKLPCSDNCGVSINWHLQSDYTTGWAAKMTIFNWLDEPFVDWFTVVELKNAGDGFDKVYSFNGTKLPKNDMAVLFQGLKYDNYLVAIKNASNPEKSPKIPGKQQSVISFKKKKLHGLNIRKGDGFPSKLYFNGEQCALPSELPLENEGHRTGIISYFTVIVVAFFTFLLTMDLFHW 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 406711 408841 - Conep06aG0008400.1 Cone6ag0084 438968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0084 675 MobiDBLite consensus disorder prediction 33 56 - -
Cone6ag0084 675 Pfam COBRA-like protein 246 425 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cone6ag0084 675 PANTHER COBRA-LIKE PROTEIN 7 10 669 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0084 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0747 Cone-Chr15:4342724 Cone6ag0084 Cone-Chr6:406711 7.42E-251 dispersed
Cone4ag0122 Cone-Chr4:572363 Cone6ag0084 Cone-Chr6:406711 1.58E-256 dispersed
Cone6ag0084 Cone-Chr6:406711 Cone7ag0118 Cone-Chr7:502059 1.58E-86 dispersed
Cone16ag0165 Cone-Chr16:1013318 Cone6ag0084 Cone-Chr6:406711 0 transposed
Cone14ag1126 Cone-Chr14:9363915 Cone6ag0084 Cone-Chr6:406711 0 wgd
Cone6ag0084 Cone-Chr6:406711 Cone6ag1076 Cone-Chr6:6507109 4.00E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g458 . . . . Bpe09g00187 Bpe08g01136 . Bma13g01035 Cmo16g00909 Cmo04g01012 . . . . Sed07g1929 . . Bhi09g01934 Tan01g4517 Cmetu06g0182 . Hepe01g1303 . . Cla10g00527 Cam10g0521 Cec10g0538 Cco10g0528 Clacu10g0543 Cmu10g1369 Cre10g0772 Cone6ag0084 . Cone14ag1126 . Lsi04g01234 Csa03g00533 . Cme06g02279 . Blo10g00811 . Bda12g00896 . . Bma07g01310 . . . . Cma04g00942 Cma16g00850 Car04g00880 Car16g00854 . Cpe01g00854 . . . . . . . Cla05g01523 Cam05g1636 Cec05g1640 Cco05g1673 Clacu05g1626 Cmu05g1523 . Lsi05g00621 . Chy06g01797 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone19ag0037 . 50 452 COBRA Gene Family AT5G60920 81.2 5.2e-212 734.2
Cone13ag0029 . 50 458 COBRA Gene Family AT5G60920 80.0 1.5e-211 732.6
Cone2ag0494 . 27 416 COBRA Gene Family AT5G60920 73.2 1.3e-183 639.8
Cone11ag0355 . 36 436 COBRA Gene Family AT5G60920 68.6 3.8e-178 621.7
Cone13ag0028 . 38 415 COBRA Gene Family AT5G60920 69.6 2.2e-173 605.9
Cone3ag0918 . 15 398 COBRA Gene Family AT5G60920 52.9 2.2e-125 446.4
Cone3ag1493 . 50 215 COBRA Gene Family AT5G60920 75.4 2.8e-80 296.6
Cone16ag0514 . 20 139 COBRA Gene Family AT5G60920 62.5 1.3e-40 164.9
Cone19ag0037 . 19 443 COBRA Gene Family AT3G02210 76.6 1.2e-209 726.5
Cone13ag0029 . 19 441 COBRA Gene Family AT3G02210 75.5 1.9e-207 719.2
Cone2ag0494 . 27 395 COBRA Gene Family AT3G02210 75.6 9.0e-181 630.6
Cone11ag0355 . 12 439 COBRA Gene Family AT3G02210 66.0 9.3e-178 620.5
Cone13ag0028 . 15 436 COBRA Gene Family AT3G02210 65.3 5.1e-176 614.8
Cone3ag0918 . 2 421 COBRA Gene Family AT3G02210 53.5 2.7e-132 469.5
Cone18ag1145 . 28 368 COBRA Gene Family AT3G02210 50.2 2.7e-108 389.8
Cone3ag1493 . 20 215 COBRA Gene Family AT3G02210 69.8 7.9e-84 308.5
Cone16ag0514 . 20 120 COBRA Gene Family AT3G02210 72.3 5.2e-43 172.9
Cone13ag0029 . 18 455 COBRA Gene Family AT3G29810 74.1 1.1e-207 719.9
Cone19ag0037 . 18 441 COBRA Gene Family AT3G29810 76.5 1.4e-207 719.5
Cone2ag0494 . 27 412 COBRA Gene Family AT3G29810 71.5 8.8e-181 630.6
Cone11ag0355 . 24 437 COBRA Gene Family AT3G29810 65.8 5.5e-175 611.3
Cone13ag0028 . 21 417 COBRA Gene Family AT3G29810 64.5 2.0e-169 592.8
Cone3ag0918 . 2 422 COBRA Gene Family AT3G29810 53.8 5.2e-133 471.9
Cone3ag1493 . 20 215 COBRA Gene Family AT3G29810 69.6 2.9e-83 306.6
Cone16ag0514 . 20 135 COBRA Gene Family AT3G29810 62.9 3.6e-41 166.8
Cone11ag0355 . 14 344 COBRA Gene Family AT5G15630 83.7 3.2e-178 621.7
Cone13ag0028 . 18 346 COBRA Gene Family AT5G15630 83.3 1.7e-176 615.9
Cone19ag0037 . 33 358 COBRA Gene Family AT5G15630 74.2 1.1e-151 533.5
Cone13ag0029 . 38 358 COBRA Gene Family AT5G15630 73.8 8.1e-150 527.3
Cone2ag0494 . 27 321 COBRA Gene Family AT5G15630 67.1 9.7e-127 450.7
Cone18ag1145 . 32 307 COBRA Gene Family AT5G15630 57.4 2.7e-105 379.4
Cone3ag0918 . 3 330 COBRA Gene Family AT5G15630 50.2 4.7e-97 352.1
Cone3ag1493 . 20 215 COBRA Gene Family AT5G15630 69.3 1.8e-80 297.0
Cone13ag0029 . 21 226 COBRA Gene Family AT5G60950 57.3 1.3e-65 246.9
Cone19ag0037 . 21 226 COBRA Gene Family AT5G60950 57.3 1.1e-64 243.8
Cone11ag0355 . 11 212 COBRA Gene Family AT5G60950 55.4 1.2e-58 223.8
Cone3ag1493 . 21 215 COBRA Gene Family AT5G60950 54.0 1.5e-58 223.4
Cone13ag0028 . 12 214 COBRA Gene Family AT5G60950 53.9 6.3e-57 218.0
Cone2ag0494 . 27 189 COBRA Gene Family AT5G60950 59.5 6.1e-52 201.4
Cone3ag0918 . 3 402 COBRA Gene Family AT1G09790 58.0 9.6e-143 504.2
Cone19ag0037 . 21 432 COBRA Gene Family AT1G09790 54.4 3.3e-135 479.2
Cone13ag0029 . 21 432 COBRA Gene Family AT1G09790 54.0 1.6e-134 476.9
Cone11ag0355 . 3 418 COBRA Gene Family AT1G09790 50.8 9.0e-133 471.1
Cone13ag0028 . 15 417 COBRA Gene Family AT1G09790 51.7 2.1e-129 459.9
Cone2ag0494 . 29 391 COBRA Gene Family AT1G09790 56.8 1.0e-128 457.6
Cone4ag0122 . 5 628 COBRA Gene Family AT4G16120 66.0 3.1e-254 875.2
Cone15ag0747 . 33 657 COBRA Gene Family AT4G16120 64.5 1.6e-250 862.8
Cone6ag0084 . 57 649 COBRA Gene Family AT4G16120 52.7 6.5e-204 708.0
Cone16ag0165 . 55 648 COBRA Gene Family AT4G16120 51.7 1.1e-200 697.2
Cone14ag1126 . 28 621 COBRA Gene Family AT4G16120 53.9 9.7e-200 694.1
Cone7ag0118 . 38 292 COBRA Gene Family AT4G16120 61.0 2.7e-93 340.5
Cone7ag0119 . 42 209 COBRA Gene Family AT4G16120 63.7 4.1e-65 246.9
Cone4ag0122 . 11 634 COBRA Gene Family AT3G16860 64.2 2.2e-244 842.4
Cone15ag0747 . 1 636 COBRA Gene Family AT3G16860 60.5 9.8e-237 817.0
Cone6ag0084 . 45 667 COBRA Gene Family AT3G16860 50.5 9.3e-195 677.6
Cone16ag0165 . 45 658 COBRA Gene Family AT3G16860 50.2 3.5e-194 675.6
Cone14ag1126 . 5 617 COBRA Gene Family AT3G16860 51.3 1.5e-192 670.2
Cone7ag0118 . 28 292 COBRA Gene Family AT3G16860 60.7 8.4e-95 345.5
Cone7ag0119 . 42 210 COBRA Gene Family AT3G16860 61.5 3.2e-62 237.3
Cone4ag0122 . 15 653 COBRA Gene Family AT5G49270 60.1 1.6e-239 826.2
Cone15ag0747 . 6 646 COBRA Gene Family AT5G49270 59.0 1.1e-230 797.0
Cone14ag1126 . 24 642 COBRA Gene Family AT5G49270 50.9 4.7e-194 675.2
Cone7ag0118 . 33 292 COBRA Gene Family AT5G49270 55.9 3.5e-88 323.6
Cone7ag0119 . 33 222 COBRA Gene Family AT5G49270 56.6 1.9e-57 221.5
Cone6ag0084 . 48 671 COBRA Gene Family AT3G20580 59.4 2.7e-237 818.9
Cone14ag1126 . 1 644 COBRA Gene Family AT3G20580 59.4 2.3e-236 815.8
Cone16ag0165 . 5 667 COBRA Gene Family AT3G20580 56.5 3.6e-234 808.5
Cone4ag0122 . 31 649 COBRA Gene Family AT3G20580 53.3 9.5e-203 704.1
Cone15ag0747 . 29 658 COBRA Gene Family AT3G20580 52.4 2.4e-198 689.5
Cone7ag0119 . 28 229 COBRA Gene Family AT3G20580 53.9 8.7e-63 239.2
Cone6ag1076 . 1 192 COBRA Gene Family AT3G20580 50.9 2.1e-56 218.0
Cone14ag1126 . 11 645 COBRA Gene Family AT4G27110 60.2 2.6e-232 802.4
Cone6ag0084 . 8 671 COBRA Gene Family AT4G27110 55.4 3.0e-225 778.9
Cone16ag0165 . 35 671 COBRA Gene Family AT4G27110 56.7 1.1e-222 770.4
Cone4ag0122 . 26 649 COBRA Gene Family AT4G27110 51.1 1.2e-194 677.2
Cone6ag1076 . 2 191 COBRA Gene Family AT4G27110 54.2 2.0e-59 228.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002898 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 2 2 2 2 1 1 2 2 55