Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0103 ATGATGAACACAGTTTCATTTACTTTCATACTCATCCTTTCTTGCTTCATAATCTCAGCTGCTATTGAAATTGATTCCATCTCTCAATCACAAAACCTTACTGATGGAATCACAATGGTTTCCAAATCCGGTTTATTCGAACTCGGTTTCTTCAGTCCCGGAGTTTCGAAAAACCGTTACCTTGGAATCTGGTACAAGAACATCTCAGTTCCAACTTATGTTTGGGTTGCAAACAGGGTTAATCCAATCAATGACTCATCTGGAACATTGATGATAAACAATCTAGCCAATTCCCTTATCCTCACTCAGAACAACACTATTGTCTGGTCTGCTAATTACTCATCCAAACAAGTCCAAAACCTGACCCTAAAGCTGTTAGATTCCGGAAACCTTGTCTTAAAAGAGGAAGGAAATTCAGGCGACAACAACGACAGCTACTCATGGCAGAGCTTTGATTATCCTACTGATACTTTGTTGCCTGGCATGAAGATTGGATGGAACTTTAGGACAAACTTAAACAAACGTTTGTCAGCTTGGACTAGTCCAAACGATCCCTCTCCTGCAAGCTTGACTATGGAAATGGAGAATAATAGCTACCCTGAACCGGCCATGTGGAACGGCTCGAAAGAGTATATGAGAAGTGGGCCATGGAATGGTATTACATACAGTGCAAAACCAAGCACAGCTCTCCCCATTATAGTTTACAACTATGTTCATACCAAGGATGAGCTTTCCTTCAGCTATACGCTAATTGATCAGTCAATGATCGGGCGGATGATATTAAACCAATCCATGAACCGAAGAGAGATGCACTTATTATCTTCTGGAACGGAGGAAACTTGGAGGCTATATGCGACAATGCCTAGAGATTATTGTGACACTTACGGCATGTGTGGGCCTTTCGGTAGATGTGATCCGGGAAATTTTCCAGCCTGTCAATGCTTGAAAGGGTTCAGTCCTAGGTTGCCTGCGAAATGGAAGTTAGCTGAGTACACAGAGGGGTGTGTTCGTAATAAACCGTTGAACTGTGGGGAGAAATTTGGATTTGTAAAATATCAGAGATTGAAATTGCCGGAAACGAAGAATACTTGGGTGAATGAGAGTATGAGTCTCCAGGAATGTAAGCAGAAATGCTTGAGTAATTGTTCTTGTACTGGATATGCAAATACAGATATTAGAGGAAAGGGGAGTGGATGTGTTATCTGGTCTGGTGATTTGATTGATATCAAACAGATTACCGGCGGTGGACAGGATTTATATGTCCGATTATCGGCTTCGGAATTAGATACAAAGAGTAATAGTGCGATCATCATTGGAGCAACAGTTGCTGCTGCTGCTGTTATGATTGCCGGGCTACTCTTAGGTGGCTTCTTCATTATCCGGAAGAAGAAAAAGATGAAAGGTACGGGGAAAAATGGAGAGAAGCATGATTTAGAGCTGCCCTTATTTGATTTATCTTCAATAGCTACTGCCACTGATAACTTTTCCTTCAATAACAAGCTTGGAGAAGGCGGTTTCGGGTCCGTATTCTGGGGTATTCTAGCAGACGGACAAGAAATTGCGGTGAAGAGGCTTTCTATTAGTTCTAGACAAGGAGTTGATGAGTTCAAGAATGAAGTGATATTAATAGCCAAACTTCAGCATAGAAATCTCGTTCGGCTTTTAGGTTGTTGCATTGAAGAAGAAGAGAAGATGTTGGTTTATGAGTACATGCCTAACAAGAGCTTAGACTCCATCCTTTTCGAAGAAGCGAGAAGGAAAGTGTTGGATTGGTCGAAGCGGTTCAACATAATATGCGGGATTGCTAGGGGGCTTCTCTATCTTCATCAAGATTCAAGACTTCGGATTATTCATAGAGACCTCAAAGCGAGCAATGTCTTGCTCGATATTGATATGAACCCTAAGATCTCCGACTTTGGCATGGCTAGAACTTTTGGAGGAGATCAAACCGAAGGAAATACTCGCAGAGTGGTTGGAACTTATGGCTATATGGCACCAGAATATGCCATTGAAGGCCAGTTCTCGGTCAAATCTGATGTCTTCAGTTTTGGAATTTTAATGTTGGAGCTTATAAGCGGAGAGAAGAATAGAGGATTTTATCGACCAAACAACAAACTTAACCTTATAGGACATGCATGGACTTTATGGAACGAAGGGAGACCTTTAGAGCTGATTGATGTAGCCATTGGAGAGTCCTATGCCATTTCCGTGGTTCTTCGTTGTGTGCACATAAGCCTGTTATGTATGCAGCAACATCCGGAAGACCGACCAACCATGTCACATGTGGTCTTGATGTTGAGTAGTGAGAGCGCATTGCCTCAACCAAAAGAACCTGGTTTCTTCATGGCCGGAAAAGAGTCACCAGAACTGTATTACATCTCCGGCAAGAAGGATGCGTCTTCCACTAACGAGATGAGCATTACGCAGATGGAAGCTCGTTGA 2442 42.3 MMNTVSFTFILILSCFIISAAIEIDSISQSQNLTDGITMVSKSGLFELGFFSPGVSKNRYLGIWYKNISVPTYVWVANRVNPINDSSGTLMINNLANSLILTQNNTIVWSANYSSKQVQNLTLKLLDSGNLVLKEEGNSGDNNDSYSWQSFDYPTDTLLPGMKIGWNFRTNLNKRLSAWTSPNDPSPASLTMEMENNSYPEPAMWNGSKEYMRSGPWNGITYSAKPSTALPIIVYNYVHTKDELSFSYTLIDQSMIGRMILNQSMNRREMHLLSSGTEETWRLYATMPRDYCDTYGMCGPFGRCDPGNFPACQCLKGFSPRLPAKWKLAEYTEGCVRNKPLNCGEKFGFVKYQRLKLPETKNTWVNESMSLQECKQKCLSNCSCTGYANTDIRGKGSGCVIWSGDLIDIKQITGGGQDLYVRLSASELDTKSNSAIIIGATVAAAAVMIAGLLLGGFFIIRKKKKMKGTGKNGEKHDLELPLFDLSSIATATDNFSFNNKLGEGGFGSVFWGILADGQEIAVKRLSISSRQGVDEFKNEVILIAKLQHRNLVRLLGCCIEEEEKMLVYEYMPNKSLDSILFEEARRKVLDWSKRFNIICGIARGLLYLHQDSRLRIIHRDLKASNVLLDIDMNPKISDFGMARTFGGDQTEGNTRRVVGTYGYMAPEYAIEGQFSVKSDVFSFGILMLELISGEKNRGFYRPNNKLNLIGHAWTLWNEGRPLELIDVAIGESYAISVVLRCVHISLLCMQQHPEDRPTMSHVVLMLSSESALPQPKEPGFFMAGKESPELYYISGKKDASSTNEMSITQMEAR 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 501150 504441 - Conep06aG0010300.1 Cone6ag0103 438987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0103 813 CDD B_lectin 33 154 IPR001480 -
Cone6ag0103 813 PIRSF SRK 1 813 IPR024171 GO:0004674(InterPro)
Cone6ag0103 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 571 774 - -
Cone6ag0103 813 Pfam S-locus glycoprotein domain 213 321 IPR000858 GO:0048544(InterPro)
Cone6ag0103 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 460 570 - -
Cone6ag0103 813 Pfam PAN-like domain 344 409 IPR003609 -
Cone6ag0103 813 ProSiteProfiles PAN/Apple domain profile. 343 424 IPR003609 -
Cone6ag0103 813 Pfam D-mannose binding lectin 72 179 IPR001480 -
Cone6ag0103 813 ProSitePatterns Protein kinases ATP-binding region signature. 501 523 IPR017441 GO:0005524(InterPro)
Cone6ag0103 813 Pfam Protein tyrosine and serine/threonine kinase 496 763 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag0103 813 ProSiteProfiles Protein kinase domain profile. 495 772 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0103 813 Gene3D Phosphorylase Kinase; domain 1 458 570 - -
Cone6ag0103 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 151 - -
Cone6ag0103 813 Gene3D Transferase(Phosphotransferase) domain 1 571 776 - -
Cone6ag0103 813 SMART ntp_6 344 423 IPR003609 -
Cone6ag0103 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 185 IPR036426 -
Cone6ag0103 813 SMART serkin_6 495 766 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0103 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 342 423 - -
Cone6ag0103 813 Gene3D - 20 151 IPR036426 -
Cone6ag0103 813 ProSiteProfiles Bulb-type lectin domain profile. 24 146 IPR001480 -
Cone6ag0103 813 Gene3D Hepatocyte Growth Factor 340 422 - -
Cone6ag0103 813 SMART blect_4 30 154 IPR001480 -
Cone6ag0103 813 CDD STKc_IRAK 501 766 - -
Cone6ag0103 813 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 780 - -
Cone6ag0103 813 CDD PAN_AP_plant 340 424 - -
Cone6ag0103 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag0103 813 SUPERFAMILY Protein kinase-like (PK-like) 480 766 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1121 Cone-Chr15:9143339 Cone6ag0103 Cone-Chr6:501150 0 dispersed
Cone15ag1122 Cone-Chr15:9148354 Cone6ag0103 Cone-Chr6:501150 0 dispersed
Cone6ag0103 Cone-Chr6:501150 Cone9ag0123 Cone-Chr9:537676 0 dispersed
Cone12ag1413 Cone-Chr12:10327058 Cone6ag0103 Cone-Chr6:501150 2.11E-130 wgd
Cone14ag1104 Cone-Chr14:9211550 Cone6ag0103 Cone-Chr6:501150 1.92E-223 wgd
Cone15ag1114 Cone-Chr15:9112166 Cone6ag0103 Cone-Chr6:501150 1.11E-266 wgd
Cone3ag1372 Cone-Chr3:32704170 Cone6ag0103 Cone-Chr6:501150 2.62E-49 wgd
Cone6ag0103 Cone-Chr6:501150 Cone6ag1065 Cone-Chr6:6254890 1.31E-260 wgd
Cone6ag0103 Cone-Chr6:501150 Cone9ag0121 Cone-Chr9:528827 2.50E-238 wgd
Cone6ag0103 Cone-Chr6:501150 Cone9ag1057 Cone-Chr9:5762145 1.35E-260 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82902 PF08477 Roc 2.50E-11 CL0023 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0103 - - - 0.0