Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0104 ATGGTGATGGACTGTGAGCTCTGTGGGAAGCAAGCGAGGATGTACTGCGAGTCGGACCAAGCGATTTTATGCTGGGACTGCGATAAGAAGGTTCATTCAGCTAACTTTCTGGTGGAAAAACACAGTAGAAGCCTTCTCTGCCATGTATGCCAGTCACCGACTCCATGGAAAGCCTCTGGTCGCAAGCTTACGCCTACTGTGTCCGTCTGCGAGGGATGTTTCGCACTGTGTAGTAGAAAGTCCGAGCTAGGTCGAGACCTGGACAGCCAGCTGGTTAATGATGACGACGCCGATGAGATTGAAGATGAGGATGCTGCCGATAGCTATGATAGAGATGAAATCGAAGGAGAAGATGAGGAAGAAGAAGAAGAAGAAGAAGACGAGGAGGAGGAGGAGGAAGAAGATGGAGATAATCAGGTGGTGCCTTGGTCTTCTAGTTCTAATTCTTTGTCGCTGCCACCACCTCCTCCTTCGGAAGCGAGCTCAAGCAGCGAGGGAGAGATTTCAGGCGATGGAGGTGGTCAGTTATTGAAACGGAAGAGAGAGACAGATGCAGATCTGGATGCTAATGACGAAAACGGATGCTCAGCCTCTCAACTATCAATCTCAAGGAAGCGATTACTCAATGACGAAGCAACAACTTCTTCGAGCTCATCCAGATCGGTGAAAGCAAAACAAGTTGCCACAACAACAGAAAGTAATCACGACTCCGCCACAGTGAACGATAATGGTGGTCCACCCGAGTTAAGATCGACGACGTCTGTCATCCACGCAATACAGGATCTCCAGAACGGAATTATCACCGGCGCCGACGATGCATCGAGGACGATTCTCGAGATCATTAAACTAAGCAGAGATCAGAGCCGTTGA 870 49.31 MVMDCELCGKQARMYCESDQAILCWDCDKKVHSANFLVEKHSRSLLCHVCQSPTPWKASGRKLTPTVSVCEGCFALCSRKSELGRDLDSQLVNDDDADEIEDEDAADSYDRDEIEGEDEEEEEEEEDEEEEEEEDGDNQVVPWSSSSNSLSLPPPPPSEASSSSEGEISGDGGGQLLKRKRETDADLDANDENGCSASQLSISRKRLLNDEATTSSSSSRSVKAKQVATTTESNHDSATVNDNGGPPELRSTTSVIHAIQDLQNGIITGADDASRTILEIIKLSRDQSR 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 507294 508767 + Conep06aG0010400.1 Cone6ag0104 438988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0104 289 SMART bboxneu5 1 46 IPR000315 GO:0008270(InterPro)
Cone6ag0104 289 MobiDBLite consensus disorder prediction 88 176 - -
Cone6ag0104 289 Coils Coil 111 139 - -
Cone6ag0104 289 MobiDBLite consensus disorder prediction 208 250 - -
Cone6ag0104 289 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270(InterPro)
Cone6ag0104 289 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 5 220 - -
Cone6ag0104 289 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270(InterPro)
Cone6ag0104 289 CDD Bbox1_BBX-like 5 46 IPR049808 -
Cone6ag0104 289 MobiDBLite consensus disorder prediction 181 200 - -
Cone6ag0104 289 MobiDBLite consensus disorder prediction 92 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0104 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0104 Cone-Chr6:507294 Cone8ag1471 Cone-Chr8:11266952 4.17E-31 dispersed
Cone12ag1416 Cone-Chr12:10335887 Cone6ag0104 Cone-Chr6:507294 2.00E-32 wgd
Cone3ag1373 Cone-Chr3:32709900 Cone6ag0104 Cone-Chr6:507294 1.07E-32 wgd
Cone6ag0104 Cone-Chr6:507294 Cone9ag0124 Cone-Chr9:544375 6.91E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g324 . . Bda07g00265 . . . . . . . . . . . . Cpe06g00728 Cpe02g00732 . . . . . . . . . . . . . . Cone6ag0104 Cone9ag0124 . . Lsi04g01267 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000776 4 2 3 3 3 3 3 3 3 3 3 3 4 3 2 4 3 6 4 3 3 3 2 2 2 3 2 3 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46258 PF00291 PALP 7.80E-47 CL0063 Cone TR