Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0106 ATGGTCGCAGCCAAGCTTCTTTTCTTCAGGCCTCATTCTCTCCCCCTCTCTCTCTCCCCTAAATTCATCTTCCCCAGAAAACACTCTGCCCCTTATTTCCTCATCCTCTCTTCCTTCACCCCTCATACCCAATCCCAAAACCCAGACCAGACCTTCTCCTATGGCTATGGACCCTCTCTCCACAAGGGCGCCAAATCAACCCCAATCCACAACCATCCTGAATCACTCATCAAAACCTCGGATCTAAGCACAGACCAGAGATATCAACCGCATAAAGGAAAGGAAGAAGAAAATGATATATTCGACGAAGAAATTTTCACTCGAGTCTTCGATATTGCAGCGCTTCGTGCTCTGGCTAAAGACAGTTTTGCTCTAGAGAGCAGATTACGAGGCCATCTCTTGAACTGGCCACGAATACGCAACATTGCTCGAGTTCCTGGAGATGAAGTTGAAGCCGAGCTTGTAGAGCTCGTAAGAGACGATGAAATAGATAGTAGTGCTTCATTGAACAGGCGGATATATGGAAAAGTTGAAGGTGATGGAGAGCCATTGAGTCCGATATTGTACAGAGATAAGCTAGCCAGGACGTTTAATTCAAACGGTTATGTGAATTTTAAGAACTTGGCTAAGATGTCGAGGCCAAGTAAGAAGAAGAAGAAGTGGAAGAGGAAGGAAGAAGAGAAAGATGAGGGGGAAAAGAGGGGTGGGAAAAATGGGTTTTCCCTGATTGAGGTTGTCGAAGAAGAAGAAGAGGAGGATATGAAAGGGCTGTTGGGTGATGAATCTAAAGGTGGCAAATGGAGGGGTTCGACAAGATTGTTGCTTTTGGATGAACGGTACGGGGATAAGGGCGTGGAAGATTTGCCCGAGGCCATTAAGGCTCTGCTGAAATATGGTACTAAGGAAAGCGGGGAATCAAATTTTGAGCTGGTGAGGTGCAGGCTAACCCTGTTCTATAAGTATTGGCAAATGGATCAGATTTTGAAAGCCTTGCTTCCTGAGGGAATGCTTGTCCCTTCAGCCTTTGAAACTGTTGGTCATATTGCCCATCTAAACCTTAGAGACGAACATCTCCCGTACAAGAAGCTTATTGCGAAGGTTGTTTTGGACAAACACAAGCCAAAGATACAAACAGTTGTGAATAAGATTGATGCGATTCACAATGACTACAGAACAATGCAGCTTGAGGTTTTGGCTGGAAACCATTCTCTTGTAACTACACTTGTTGAGAATGGATTACGATTTCATTTAGATTTAGCAACCGTGTATTGGAATTCCAGACTTGCAACAGAAAGACAACATCTACTGAGTGGATTTACGAAGAGAGATGTTGTTTGTGATGTTTTCTCTGGAGCTGGCCCAATAGCTATATCTGCAGCGAAGATAGTAAAACGCGTCTATGCTAATGATCTAAATCCCTATGCAGTTGAATACTTGGAAAGAAATAGTGTTCTGAACAAGCTTGAAAGGAGGATTAAGGTTTTTAACATGGATGGAAGGAGGTTCATCCATGCTATGTATGCAAGTGAGAAGGCCCCCTCCATAACACAAGTTGTAATGAATTTGCCTAATGATGCCACTGAGTATCTAGATGCATTCAGGGGAATACTGAGAGACAGAACGACGGATGATGAATTCCCTTTGCCAATGATCCATGTCTATGGATTCTCCAAAGCTAGTGATCCCGAGTTCGACTTCCACGAGAGGATAAGGATAGCACTATGTGAGGTGGCAGTCGACGTTGAAATGCGTAGGGTCCGCCTTGTAGCCCCTGGAAAATGGATGCTCTGCGCATCATTTGTTCTCCCAAAGAGCTTGGCACTTGCAAAACCTATACATGAATTTTAA 1848 44.16 MVAAKLLFFRPHSLPLSLSPKFIFPRKHSAPYFLILSSFTPHTQSQNPDQTFSYGYGPSLHKGAKSTPIHNHPESLIKTSDLSTDQRYQPHKGKEEENDIFDEEIFTRVFDIAALRALAKDSFALESRLRGHLLNWPRIRNIARVPGDEVEAELVELVRDDEIDSSASLNRRIYGKVEGDGEPLSPILYRDKLARTFNSNGYVNFKNLAKMSRPSKKKKKWKRKEEEKDEGEKRGGKNGFSLIEVVEEEEEEDMKGLLGDESKGGKWRGSTRLLLLDERYGDKGVEDLPEAIKALLKYGTKESGESNFELVRCRLTLFYKYWQMDQILKALLPEGMLVPSAFETVGHIAHLNLRDEHLPYKKLIAKVVLDKHKPKIQTVVNKIDAIHNDYRTMQLEVLAGNHSLVTTLVENGLRFHLDLATVYWNSRLATERQHLLSGFTKRDVVCDVFSGAGPIAISAAKIVKRVYANDLNPYAVEYLERNSVLNKLERRIKVFNMDGRRFIHAMYASEKAPSITQVVMNLPNDATEYLDAFRGILRDRTTDDEFPLPMIHVYGFSKASDPEFDFHERIRIALCEVAVDVEMRRVRLVAPGKWMLCASFVLPKSLALAKPIHEF 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 516455 519856 - Conep06aG0010600.1 Cone6ag0106 438990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0106 615 ProSiteProfiles SAM-dependent methyltransferase TRM5/TYW2-type domain profile. 342 604 IPR030382 -
Cone6ag0106 615 Gene3D - 323 401 - -
Cone6ag0106 615 MobiDBLite consensus disorder prediction 222 237 - -
Cone6ag0106 615 FunFam tRNA (guanine(37)-N1)-methyltransferase 324 402 - -
Cone6ag0106 615 MobiDBLite consensus disorder prediction 213 237 - -
Cone6ag0106 615 CDD AdoMet_MTases 445 502 - -
Cone6ag0106 615 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 338 604 IPR029063 -
Cone6ag0106 615 PANTHER TRNA METHYLTRANSFERASE 109 605 - GO:0002939(PANTHER)|GO:0005737(PANTHER)|GO:0008175(PANTHER)|GO:0009019(PANTHER)|GO:0030488(PANTHER)
Cone6ag0106 615 Gene3D Vaccinia Virus protein VP39 405 602 IPR029063 -
Cone6ag0106 615 FunFam tRNA (guanine(37)-N1)-methyltransferase 405 602 - -
Cone6ag0106 615 Hamap tRNA (guanine(37)-N1)-methyltransferase [TRMT5]. 98 604 IPR025792 GO:0030488(InterPro)|GO:0052906(InterPro)
Cone6ag0106 615 Pfam Met-10+ like-protein 341 540 IPR030382 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0106 K15429 - - mdm:114824024 818.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0709 Cone-Chr4:3764728 Cone6ag0106 Cone-Chr6:516455 1.28E-49 dispersed
Cone6ag0106 Cone-Chr6:516455 Cone9ag0126 Cone-Chr9:553482 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g321 . . . . . . . . . . . . . . . Cpe06g00725 . . . . . . . . Cla11g01811 Cam11g1877 Cec11g1900 Cco11g1908 Clacu11g2041 Cmu11g1846 Cre11g2251 Cone6ag0106 Cone9ag0126 . . Lsi04g01273 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010172 2 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 29