Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0112 ATGGCAGCTGCTGCTAGCTCTAGCACTCTCCTTAGAGCAACCCCATTTCTGGGCCAGAGCAGAGGCTCTAGCTCTAACGCCTTAAGAGAATTTGTCTCTATGGGAACTGGAAAATACACCATGGGGAATGAGTTGTGGTACGGACCAGACAGGGTAAAGTATTTAGGACCATTTTCTGCCCAGACTCCTTCCTACCTGACCGGAGAATTCCCTGGTGATTACGGATGGGACACTGCCGGATTATCTGCTGATCCAGAGGCATTTGCAAGGAACAGGGCTCTTGAGGTGATCCACGGCAGGTGGGCCATGCTCGGAGCATTGGGATCCATCACCCCAGAAGTCCTTGAGAAATGGGTCAAAGTGGACTTCAAGGAGCCAGTCTGGTTCAAAGCCGGAGCCCAAATCTTCTCGGAAGGAGGGCTAGACTACTTGGGCAACCCCAATTTGGTTCATGCTCAGAGCATCTTAGCAGTGTTGGGCTTTCAGGTGGTTCTGATGGGTCTTGTTGAAGGCTTCCGCATCAATGGCCTGGAAGGAGTAGGAGAAGGGAACAACTTGTACCCTGGCGGTCAATACTTTGACCCATTGGGTCTTGCTGATGACCCTGTCACTTTCGCTGAGCTTAAGGTCAAGGAAATCAAGAATGGTCGCCTTGCTATGTTTTCTATGTTTGGATTCTTTGTGCAGGCCATTGTTACCGGAAAAGGCCCTCTCGAGAACCTCTTGGACCACCTTGACAACCCAGTTGCTAACAATGCCTGGGTTTATGCCACCAAGTTCGTGCCTGGATCATGA 795 50.82 MAAAASSSTLLRATPFLGQSRGSSSNALREFVSMGTGKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGSITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLEGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGS 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 539985 541366 + Conep06aG0011200.1 Cone6ag0112 438996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0112 264 Pfam Chlorophyll A-B binding protein 63 231 IPR022796 -
Cone6ag0112 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 23 263 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cone6ag0112 264 Gene3D Chlorophyll a/b binding protein domain 53 257 - -
Cone6ag0112 264 FunFam Chlorophyll a-b binding protein, chloroplastic 53 257 - -
Cone6ag0112 264 SUPERFAMILY Chlorophyll a-b binding protein 45 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1332 Cone-Chr11:9782227 Cone6ag0112 Cone-Chr6:539985 2.71E-66 dispersed
Cone6ag0112 Cone-Chr6:539985 Cone8ag1383 Cone-Chr8:10959263 1.52E-123 dispersed
Cone6ag0112 Cone-Chr6:539985 Cone9ag0132 Cone-Chr9:578039 6.97E-191 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0112 K08914 - vvi:100260599 505.753