Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone6ag0113 | ATGTTTCCGGTATGGACGTCAACGATAGAGCGTAGCTCTCTGGAGGGAATGCTGGATATGCTTCGGCAGAGAGACGAGGATGAGAAGCCTAAGGACTTGCCGCCGGCGTTGCCTGCTCGTCCTACTTCGAAAGCTCGTCTTCCTCCAGCCAGGCGCTCTTTACCGAACAACTTCAGCGTGAGCGACAGCGGTTTAAAAAAGGTCATGCAGAATGGAAATGGGAAAGAAGACATGATGAGGAAAGAGAAGAATTCGGAATCTAAGAGATGGAGCTTTGGAACGAAGAAAGTGAGAAAAGATCAGATAGATGATTCTCCGTATTTTGTAGCAGCTGAAAGTGATCAAAATGGTCAAACAGAAAGCTCCAATGTTGATCCGCCTTCTGCTTCTACGTCGAAGATTTGGGAATCAGACTGGGATGATAATATCGGCTATTTCATTAAGATGAAACTTCATGTTTGGTGTCAACTCCCAAGTAGGCACTGGGAGTCGGGAATTATACAGTCTACTACAGGGGAGGAAGCATTTGTCATGCTCGCCAATGGAAATCTTATGAAGGTCTCCACAGAGAAGCTCTTGCCTGCTAATCCACATGTCCTTGAGGGGGTTGATGATCTTGTAAAGCTTAGTTATCTGAATGACCCATCAGTTCTTTACAATATCCGGAAAAGATACTCTCAACATAACATTTATAGTAAAGCAGGGCCAGTTTTGATTGCAGTCAATCCCTTGAAAGATGTAGATCTCTATGGAAATGATCTTGTCAATGCTTATAGGCAGAAGCTCCTGGATGGTCCTCATGTTTATGCTGTAGCTGATGCGGCCTATAACGAGATGATGACAGGCAAAGTTAATCAATCCATAATTATCAGTGGGGAAAGTGGAGCTGGGAAAACTGAGACAGCAAAAGTTGCAATGCAATATTTGACGGTTCTTGGAGGTGGCAGTTGTCAGATGGAAAGTAGAATCTTAAAAACTAATTGCATACTGGAAGCATTTGGGAATGCTAAAACATCAAAGAATGACAACTCCAGTCGATTTGGGAAATTGATTGAAATTCATTTTAGTACAATTGGGAAGTTATGTGGTGCTAAATTACAAACATTTCTGTTAGAAAAGTCAAGAGTTGTTCATCTAGCTAATGATGAGAGGTCATATCATATATTTTACCAACTTTGTGCCGGGGCCTCGTCAGTTCTCAAAGAGAGGCTCAACCTGAAACAGGCTAGCGAATATGTGTATCTTAATCAGAGTGATTCCATGGTTATTAACGGTGTTGATGATGCTCAGAAATTTCAAATTCTCATGGAAGCTCTAGATATTATTCAAATTTGCAAAGAAGATCAGGAGGATATGTTCACTGTGCTTGCTGCAATCTTATGGCTGGGAAATATCTCATTTCAAGCAAATGATGGTGAAAATCATGTGGAGGTGCTAGACGATGAAGCTTTGATGAATGCTGCCAAGTTGATGGGTTGCAGTTCCCAGGAACTTTTGTTGGTTTTATCAACCCGTAAAATTCAAGCTGGAAAGGATACTATTGCTAAAAAGTTGACCGTACAGCAGGCAATAGACACAAGAGATGCACTAGCAAAGTTTATCTATAAGGGCTTGTTTGATTATATTGTAGAACAAATCAATGTGTCACTTGAAGTAGGAAAAAAGCACACAGAAAGATCGATAAGTATCCTTGATATTTATGGATTTGAGTCATTTAAGAAGAATGGCTTTGAACAATTTTGTATAAATTATGCAAACGAGAGGCTGCAGCAACATTTCAACAGACATCTATTAAAACTTGAGCAGGAGGACTGCGAATTGGATGGGATTGACTGCATTAAAAATGATATTGAGGACAACCAAGAATGCTTGGATCTCATTGAGAAGAAACCTTTCGGGGTGCTGGCTCTGCTGGATAAGGAATCAAACTTTCCCAAGGCTACTGATCTGAACTTTGCCAATAAACTTCATCATCATTTGAATGCAAATCCTTGCTTTAAAAGAGAAAGAGGCAGGGCTTTTGCTATTCGTCATTATGCCGGAGAGGTGGCATATGATACAAATGGTTTTCTTGAGAAGAACAGAGATCCATTCCTCTCTGATTCCATCCAACTCCTTTCATCATGTAATTGTAAACTACCTTTGTTGTTTGCCACCAAAATGCTTAACTATTTACCAAAACCAGAAATTTCTTCTGGCCAGATCACAGTGGAGTCCCAAGGGCTGACTGTTGGTACAAAGTACAAGGGTCAACTGTTCAAACTCATGCGTCATTTGGAGAACACAAGTCCCCACTTTATTTTCTGCATAAAGCCAAATAGTAATCAGGTTCCAGGTTTATTTGAGGATGACCTAGTCTTACAACAGCTAAGGTGTAGTGGAGTGTTGGAAGTTGTTAAGATTTCGAGATCTGGCTATCCTACCAGAGTGACACATCAAGAGTTTGCAGAAAGGTACGGGTTTTTGCTTAAGGAGGCCAGCGTATCTAAGGATCCAGTAAGCATAACCATTGCTCTTCTACAACAATTTAAAATCCTCCCTGAAATGTACCAAGTCGGTTACACAAAATTGTTTCTTCGAAAGGGACAGATTGGAGCAATGGAGGGTAAAAGGAAAGCTGTTCTACATGGTATACTAGGGATGCAAAAGTGCTTCCGTGGTCATCGGGCTCGTCATTACTTTCATGAACTCAAGGGTGGAGCCACTATTTTACAATCATTTGTTCGTGGTGAAAATGCTAGAAGGAAGAGTACTGTTATGGTAAAGTGGTTTACTGCTTGTGTTTCCGAAACAATTGATGAGCTACAGGCAGCCATAGTACTACAATCTGACATTGCGAAATCAAAAGGAAAGCCATGCAGGAAGATTTCAGAAATAAAGGCAGAAGCAATTATGGAGAAGATGGAAGAGGAAAATGCTGCACTGCGGGAGAAAGTTCAAGAATTTGAGTTCAGGTGGCTAGAATATAAGGCAAAGATAGGATCTATGGAGGAAATTTGGCAAAAGGAGGTGAAATCTTTGCAAGCTGTACAGCAGGGGGTTCAAGTTCAGCCTACAGTTTTGGAAGAGCTTCAAAAGCGAGTTCTTAAGGCAGAAGAGATTATTGAGAAGAAACAAAAGGAAAATGCGGCACTGCAAACACAAGTACAACAATACGAGTCTAGGAAGTTAGAATATGAGGCAAAGATGTCATCTATGGAGGAAGTCTGGAAAAAACAGTTGGCATCTTTGCAATTAAGCCTTGCTGCAGCCAGAACAAGCCTTCCCACTGACAACAGTACCGCTCCGCCATTACGAGTTAATGTTAACTCGCCATCTTACTTTTATGATTCTGAGGATGCCACATCTGGAGGATCTAGAACTCCAGGGGGCTGTACTACCCCCATCAAGTTTTCTTCCATTTCTGATGTAGGAACAATGAGAGAGGCTAATGGTAATTTGTCTCCTATTATTGATATGATTAAGGAATTTGAGCAACGCAGAGTAACATTTGATGTTGAGGCCAAAGCCCTAGTTGAGGTCAGATCAGGGCCATCGACCTCTGACATAAAGCCTGATGAAGAACTTAGGCAACTCAAGTACCGGTTCGAGGCATGGAAGAAAGAGTACAAGTTAAGATTGCGAGCTACAAAAGCAAAGCTTCATAAACTTGGGCTTTCAGATGAGAAAAGTGGCCGGAAATGGTGGGGGAAGTTAAGCTCGATAGCTTCATAG | 3714 | 41.36 | MFPVWTSTIERSSLEGMLDMLRQRDEDEKPKDLPPALPARPTSKARLPPARRSLPNNFSVSDSGLKKVMQNGNGKEDMMRKEKNSESKRWSFGTKKVRKDQIDDSPYFVAAESDQNGQTESSNVDPPSASTSKIWESDWDDNIGYFIKMKLHVWCQLPSRHWESGIIQSTTGEEAFVMLANGNLMKVSTEKLLPANPHVLEGVDDLVKLSYLNDPSVLYNIRKRYSQHNIYSKAGPVLIAVNPLKDVDLYGNDLVNAYRQKLLDGPHVYAVADAAYNEMMTGKVNQSIIISGESGAGKTETAKVAMQYLTVLGGGSCQMESRILKTNCILEAFGNAKTSKNDNSSRFGKLIEIHFSTIGKLCGAKLQTFLLEKSRVVHLANDERSYHIFYQLCAGASSVLKERLNLKQASEYVYLNQSDSMVINGVDDAQKFQILMEALDIIQICKEDQEDMFTVLAAILWLGNISFQANDGENHVEVLDDEALMNAAKLMGCSSQELLLVLSTRKIQAGKDTIAKKLTVQQAIDTRDALAKFIYKGLFDYIVEQINVSLEVGKKHTERSISILDIYGFESFKKNGFEQFCINYANERLQQHFNRHLLKLEQEDCELDGIDCIKNDIEDNQECLDLIEKKPFGVLALLDKESNFPKATDLNFANKLHHHLNANPCFKRERGRAFAIRHYAGEVAYDTNGFLEKNRDPFLSDSIQLLSSCNCKLPLLFATKMLNYLPKPEISSGQITVESQGLTVGTKYKGQLFKLMRHLENTSPHFIFCIKPNSNQVPGLFEDDLVLQQLRCSGVLEVVKISRSGYPTRVTHQEFAERYGFLLKEASVSKDPVSITIALLQQFKILPEMYQVGYTKLFLRKGQIGAMEGKRKAVLHGILGMQKCFRGHRARHYFHELKGGATILQSFVRGENARRKSTVMVKWFTACVSETIDELQAAIVLQSDIAKSKGKPCRKISEIKAEAIMEKMEEENAALREKVQEFEFRWLEYKAKIGSMEEIWQKEVKSLQAVQQGVQVQPTVLEELQKRVLKAEEIIEKKQKENAALQTQVQQYESRKLEYEAKMSSMEEVWKKQLASLQLSLAAARTSLPTDNSTAPPLRVNVNSPSYFYDSEDATSGGSRTPGGCTTPIKFSSISDVGTMREANGNLSPIIDMIKEFEQRRVTFDVEAKALVEVRSGPSTSDIKPDEELRQLKYRFEAWKKEYKLRLRATKAKLHKLGLSDEKSGRKWWGKLSSIAS | 1237 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 541407 | 549670 | - | Conep06aG0011300.1 | Cone6ag0113 | 438997 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone6ag0113 | 1237 | ProSiteProfiles | IQ motif profile. | 876 | 902 | - | - | |
| Cone6ag0113 | 1237 | SMART | MYSc_2a | 195 | 873 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone6ag0113 | 1237 | MobiDBLite | consensus disorder prediction | 54 | 68 | - | - | |
| Cone6ag0113 | 1237 | SMART | iq_5 | 896 | 918 | IPR000048 | GO:0005515(InterPro) | |
| Cone6ag0113 | 1237 | SMART | iq_5 | 873 | 895 | IPR000048 | GO:0005515(InterPro) | |
| Cone6ag0113 | 1237 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 175 | 922 | IPR027417 | - | |
| Cone6ag0113 | 1237 | Gene3D | Kinesin motor domain | 204 | 801 | IPR036961 | - | |
| Cone6ag0113 | 1237 | FunFam | Myosin IE heavy chain | 441 | 549 | - | - | |
| Cone6ag0113 | 1237 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 445 | 740 | - | - | |
| Cone6ag0113 | 1237 | Pfam | Myosin head (motor domain) | 203 | 860 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone6ag0113 | 1237 | Gene3D | - | 570 | 762 | - | - | |
| Cone6ag0113 | 1237 | PANTHER | MYOSIN | 152 | 1213 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Cone6ag0113 | 1237 | FunFam | Myosin heavy chain | 384 | 440 | - | - | |
| Cone6ag0113 | 1237 | Coils | Coil | 958 | 985 | - | - | |
| Cone6ag0113 | 1237 | Pfam | IQ calmodulin-binding motif | 879 | 895 | IPR000048 | GO:0005515(InterPro) | |
| Cone6ag0113 | 1237 | MobiDBLite | consensus disorder prediction | 73 | 94 | - | - | |
| Cone6ag0113 | 1237 | MobiDBLite | consensus disorder prediction | 111 | 133 | - | - | |
| Cone6ag0113 | 1237 | CDD | MYSc_Myo8 | 215 | 860 | IPR036022 | - | |
| Cone6ag0113 | 1237 | ProSiteProfiles | Myosin motor domain profile. | 201 | 872 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone6ag0113 | 1237 | MobiDBLite | consensus disorder prediction | 21 | 94 | - | - | |
| Cone6ag0113 | 1237 | ProSiteProfiles | IQ motif profile. | 897 | 926 | - | - | |
| Cone6ag0113 | 1237 | Gene3D | - | 384 | 443 | - | - | |
| Cone6ag0113 | 1237 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 148 | 197 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone6ag0113 | 1237 | Gene3D | - | 878 | 922 | - | - | |
| Cone6ag0113 | 1237 | PRINTS | Myosin heavy chain signature | 285 | 310 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone6ag0113 | 1237 | PRINTS | Myosin heavy chain signature | 560 | 588 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone6ag0113 | 1237 | PRINTS | Myosin heavy chain signature | 328 | 355 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone6ag0113 | 1237 | PRINTS | Myosin heavy chain signature | 231 | 250 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone6ag0113 | 1237 | PRINTS | Myosin heavy chain signature | 613 | 641 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cone6ag0113 | 1237 | Coils | Coil | 1021 | 1069 | - | - | |
| Cone6ag0113 | 1237 | Gene3D | - | 805 | 873 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone1ag0804 | Cone-Chr1:53956245 | Cone6ag0113 | Cone-Chr6:541407 | 0 | dispersed | |
| Cone5ag1023 | Cone-Chr5:4441363 | Cone6ag0113 | Cone-Chr6:541407 | 0 | dispersed | |
| Cone6ag0113 | Cone-Chr6:541407 | Cone7ag0751 | Cone-Chr7:4601707 | 1.55E-165 | dispersed | |
| Cone14ag1087 | Cone-Chr14:9103051 | Cone6ag0113 | Cone-Chr6:541407 | 0 | wgd | |
| Cone15ag1098 | Cone-Chr15:9008926 | Cone6ag0113 | Cone-Chr6:541407 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone6ag0113 | K10357 | - | gmx:100819335 | 1429.46 |