Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0120 ATGGGGGATGGGAAGTATGCCAAGGAATTGGGTGTGGCGGTTAGAGTTGTCCATTTGGCATGTTCTCTTTGTCGGAGAGTGCAAGAGGAGTTGGTTTCTGCCGGAAATGGAGAGGTTAAGGCTAAGGATGATGATTCTCCAGTCACTGTTGCAGATTGGAGTGTCCAAGCGATTGTGAGTTGGATACTTTCAGAATCCTTTGGGAGTAAAAACGTCTCAATTATAGCTGAAGAAGATGTGAAAACCCTCTCTAAAGCTGATTCAGTAGGTCTATTAGGAGCTGTTGTGAAGACGGTGAATGAAAGCTTAGCCAGCACACCCAAATACGGTCTTCCAGGTCCAAAAAAGCCCCTTGAGACTTTAGAAATACTCCAAGCAATTAGCCGATGCAACTCAATGGGAGGGCCCACTGGAAGACACTGGGTACTTGACCCAGTTGATGGAACATTAGGGTTTGTGCGAGGAGATCAGTATGCAGTTGCTTTGGCCTTGATTGAAGATGGGAAAGTTGTTCTTGGAGTTCTAGGATGTCCTAATTACCCGATGAAAAAGGAGTGGCTGAGTTATCACCATAAGTTTTATCAAAGTCTATCAGAGTTGTCCCCACCTGATTCTGACATGTGGGAGAAAGGTTGTGTGATGTATGCAAGGAGAGGCAGTGGTGAGGCGTGGATGCAACCATTGGTCCTTGGAGATAGGAAGCTTGAGTGGCCCAATTCAGCTAGGTTGATTAGGGTTTCTTCTATAGATGATCCTGCATTGGCTACTTGTTGTGAACCCGTTGAGCAGCAAAATTCGAACCACTCCTTCACAGCAGGAGTTGCTCACACCATGGGTCTTAGAAATCAACCTATGCGGGTATACAGCATGGTGAAGTATGCAGCCATCGCTAGGGGAGATGCAGAGATTTTCATGAAGTTTGCAAGAACAGGGTACAAAGAGAAGATATGGGACCATGCGGCTGGTGTTGTGATTGTAGAAGCAGCTGGAGGGGTTGTAACTGATGCTGGAGGTCGTCCTTTGGACTTCTCAAAGGGAATCTATTTAGAATGTCTTGATCGGGGAATAATTGCTTGCTCGGGATCAGTCCTACATGACAAGATTATTGGGGCAGTTTATGCTAGCTGGGATTCTTCTAATCTATGA 1146 45.9 MGDGKYAKELGVAVRVVHLACSLCRRVQEELVSAGNGEVKAKDDDSPVTVADWSVQAIVSWILSESFGSKNVSIIAEEDVKTLSKADSVGLLGAVVKTVNESLASTPKYGLPGPKKPLETLEILQAISRCNSMGGPTGRHWVLDPVDGTLGFVRGDQYAVALALIEDGKVVLGVLGCPNYPMKKEWLSYHHKFYQSLSELSPPDSDMWEKGCVMYARRGSGEAWMQPLVLGDRKLEWPNSARLIRVSSIDDPALATCCEPVEQQNSNHSFTAGVAHTMGLRNQPMRVYSMVKYAAIARGDAEIFMKFARTGYKEKIWDHAAGVVIVEAAGGVVTDAGGRPLDFSKGIYLECLDRGIIACSGSVLHDKIIGAVYASWDSSNL 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 577174 580209 + Conep06aG0012000.1 Cone6ag0120 439004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0120 381 PANTHER PHOSPHATASE 3 377 IPR051090 GO:0000103(PANTHER)|GO:0008441(PANTHER)|GO:0042578(PANTHER)
Cone6ag0120 381 NCBIfam 3'(2'),5'-bisphosphate nucleotidase 6 380 IPR006239 GO:0006790(InterPro)|GO:0008441(InterPro)
Cone6ag0120 381 ProSitePatterns Inositol monophosphatase family signature 1. 141 154 IPR020583 -
Cone6ag0120 381 Gene3D - 5 234 - -
Cone6ag0120 381 SUPERFAMILY Carbohydrate phosphatase 6 374 - -
Cone6ag0120 381 FunFam PAP-specific phosphatase HAL2-like 4 234 - -
Cone6ag0120 381 FunFam PAP-specific phosphatase HAL2-like 245 378 - -
Cone6ag0120 381 Gene3D - 245 375 - -
Cone6ag0120 381 Pfam Inositol monophosphatase family 45 373 IPR000760 -
Cone6ag0120 381 CDD PAP_phosphatase 9 374 - -
Cone6ag0120 381 ProSitePatterns Inositol monophosphatase family signature 2. 317 331 IPR020550 GO:0046854(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0120 K01082 - - mdm:103430260 617.461
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0120 Cone-Chr6:577174 Cone9ag1053 Cone-Chr9:5720235 4.12E-193 dispersed
Cone6ag1270 Cone-Chr6:10147510 Cone6ag0120 Cone-Chr6:577174 1.22E-83 transposed
Cone1ag0123 Cone-Chr1:682026 Cone6ag0120 Cone-Chr6:577174 2.10E-38 wgd
Cone5ag1743 Cone-Chr5:12402524 Cone6ag0120 Cone-Chr6:577174 1.24E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g277 Blo03g00636 . Bda07g00281 . . . . . . . . Cma09g00889 Car01g01014 Car09g00806 Sed04g3152 Cpe06g00712 Cpe02g00719 Bhi09g02007 Tan01g4439 Cmetu04g1200 . Hepe01g1361 Mch11g1105 . Cla11g01794 Cam11g1859 Cec11g1883 Cco11g1890 Clacu11g2021 Cmu11g1829 Cre11g2235 Cone6ag0120 . . . Lsi04g01292 . . . . . . . Bpe11g00497 Bpe01g00390 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001761 2 2 2 2 1 1 4 2 1 2 2 2 4 2 2 4 1 3 4 2 2 2 2 2 2 2 2 2 3 1 65