Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0127 ATGTCTTCTCGCCCTTCAGCTTTCGATGCTCTTATGTCTGGAGCTCGCGCCGACGCCGCAGCAAAAATTAAGTCCCCCCAATCGTCTTCCTCTCCCAAGAAACGTATTATGTCTGGCGCTCGCGCCAACGCCGCTGCAAAACAGAAGTCCCCCCAGTCGTCTTCCTCTCCCAAGAAACTTATTATGTGTGGCTCTCTCGCCGAAGCCGCAGCAAAACAGAAGTCCCCCCAGTCGTCTTCCTCTCCCAATAAACGTAAAACCATAGATTCCTCTACGCCGCCCAAAATTTATTCTTACGAGGATGTGCCAGCGGCGAAGAAACGATGTGCCGTTACTGATCAGGAGAAGACTTCGAAATTGAGGAGTAACATTTTGGAATTGAAGAAGAAGGGAAATGATTTCAACCCGAAATCAGTTGCATGTTGGGAGTGGAACAAAGGCGAACGGGTCCCGTTTCTATTTCTTAGCTTAGCTTTTGATTTGATTTCAGAGGAGTCGAGCGAAATAGTGATTACCGATATAGTTTGTAATACATTGAGGACTCTAATGTATACTACATCTGATGATTTACTGGCCGCTGTTTATTTATTGGCTACTAAGATAGCTCCCTCGCATGAAGGTTTGGAGTTAGGATTTGGGGATGCTTTGCTTATAAAAGTTATTGCTGAGACTTTTGAAAAAACTGAAGTGCATGTTCAAAAGCAATACGAGAAATTGGGTGATTTGGGTCTCGTTGCACAAGCAAGCACTAGCAAGCGGTCTCGTTGCACAAACAAGCAATCATATATGATGCGTAAAACTGATGCATTAACTGTCGTTGGAGTGTTTGATAGATTTCGGATAATTGCCAAGGAATCCGGTAAAGGTAGTCAAAAGAACAAGAAGAATCATATCAAGTTACTTCTCGTTGCTGCCACCGAGTGTGAACCTCTCTATCTCATTCGATTACTACAGAGGAAGTTGCGAATTCGATTGGGTGAGGAGACTGTCTTAGCTGCGCTGGGACAAGCTGCTGTATATGCAGAAAAACACTCTACCCCACCTCTTCAATCTTCTTTGGAGGAGGCTGCAAAGATTGTTAAGCAAGTGTACTCTGTACTTCCGGTTTATGAGAAAATAGTCCCTGCACTTCTCACTGGTGGCGTGTGGAATCTCCCAACAGCATGTACCCTCACACCTGGTATTCCAGTTGGACCTATGCTCGCCAAACCAATCAAGGCGGTGTCTGAGATCCTTAACAAATTCCAGAATACAAAATTTACCTGTGAATACAAGTATGATGGCGAGCGTGCCCAGATACATTATATGGAGAATGGTTCAGTTGAGATATACAGTCGAAATGCTGAACGAAGTACCGGAAAGTTTCCTGATGTTGTCATTGCAGCGTCAAGGTTAAAGAAACCAACTGTAACTTCATTTATTTTGGATTGTGAACTTGTTGCTTATGATCGCGAAAAACAGAAGATTCTGACTCTCCAGGTAACAACATGA 1491 44.0 MSSRPSAFDALMSGARADAAAKIKSPQSSSSPKKRIMSGARANAAAKQKSPQSSSSPKKLIMCGSLAEAAAKQKSPQSSSSPNKRKTIDSSTPPKIYSYEDVPAAKKRCAVTDQEKTSKLRSNILELKKKGNDFNPKSVACWEWNKGERVPFLFLSLAFDLISEESSEIVITDIVCNTLRTLMYTTSDDLLAAVYLLATKIAPSHEGLELGFGDALLIKVIAETFEKTEVHVQKQYEKLGDLGLVAQASTSKRSRCTNKQSYMMRKTDALTVVGVFDRFRIIAKESGKGSQKNKKNHIKLLLVAATECEPLYLIRLLQRKLRIRLGEETVLAALGQAAVYAEKHSTPPLQSSLEEAAKIVKQVYSVLPVYEKIVPALLTGGVWNLPTACTLTPGIPVGPMLAKPIKAVSEILNKFQNTKFTCEYKYDGERAQIHYMENGSVEIYSRNAERSTGKFPDVVIAASRLKKPTVTSFILDCELVAYDREKQKILTLQVTT 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 620319 622624 + Conep06aG0012800.1 Cone6ag0127 439011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0127 496 MobiDBLite consensus disorder prediction 45 60 - -
Cone6ag0127 496 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 361 485 - -
Cone6ag0127 496 Gene3D DNA ligase/mRNA capping enzyme 399 496 - -
Cone6ag0127 496 MobiDBLite consensus disorder prediction 17 97 - -
Cone6ag0127 496 Gene3D - 126 398 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cone6ag0127 496 Pfam ATP dependent DNA ligase domain 399 495 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cone6ag0127 496 MobiDBLite consensus disorder prediction 71 94 - -
Cone6ag0127 496 Pfam DNA ligase N terminus 151 334 IPR012308 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cone6ag0127 496 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 423 431 IPR016059 GO:0003909(InterPro)
Cone6ag0127 496 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 73 494 IPR050191 GO:0003910(PANTHER)|GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0006266(PANTHER)|GO:0006273(PANTHER)
Cone6ag0127 496 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 136 389 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1014 Cone-Chr19:7567874 Cone6ag0127 Cone-Chr6:620319 5.39E-230 dispersed
Cone5ag1259 Cone-Chr5:6001243 Cone6ag0127 Cone-Chr6:620319 2.72E-23 dispersed
Cone6ag0127 Cone-Chr6:620319 Cone1ag0493 Cone-Chr1:4814028 1.06E-207 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0127 K10747 - csv:101213447 572.392