Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0131 ATGGCTCTCCAGGCTGCATCCATAGTTTCCTCTGCTTTCTCTGTTCCCAAAGAGGGAAAATCTAGTGCAGCTTTCATGGATTCCAGTGTGTTTGGAGTTTCATTCTCTGAACATCTCAAAGTCGAATACGGCTCCTCTGCCTTGAAGTGCAAGAGAGCTGGAGTTGTCAAAGTCCAAGCAGTAGCCACGACAACTCCGGCAGTAAACACAGCTGCACCTGCAGGAAAGAAAACTCTAAGAAAAGGAAGTGTAATAGTGACCGGAGCATCTTCCGGCTTAGGTCTAGCCACAGCCAAAGCACTAGCGGAGACCGGAAAATGGCACGTCATCATGGCCTGCAGAGATTTCCTCAAGGCCGAAAGAGCTGCCAAATCAGCCGGCATTTCAAAAGAAAACTACACCATAATGCACTTAGACCTCGCCTCACTTGACAGTGTCAGACAATTCGTGGACAATTTCAGACAATCCGGAAGACCACTTGACGTGCTCGTCTGTAATGCTGCTGTCTACTTTCCAACAGCGAAAGAGCCCACATTCACAGCAGAAGGGTTTGAACTTAGTGTTGGAACTAACCATCTAGGTCACTTCCTCCTTTCAAGATTATTACTCGAGGACTTGAACAAATCAGATTACCCGTCAAGACGACTCATCATAGTTGGCTCAATTACAGGAAATACAAATACATTGGCCGGAAATGTACCTCCAAAGGCTAACCTGGGAGACTTGAGAGGGCTTGCTGGTGGGCTAAACGGGCTTAACAGCTCGGCTATGATCGATGGAGGGGACTTTGATGGGGCCAAGGCCTATAAGGACAGTAAAGTGTGCAATATGCTTACCATGCAAGAGTTTCATAGGCGTTACCATGAAGAAACTGGTATTACATTTGCTTCGTTATATCCAGGATGTATTGCTACAACTGGGTTGTTTAGAGAGCACATTCCATTGTTCAGACTTCTCTTCCCTCCATTCCAGAAGTACATCACTAAGGGCTTTGTTTCTGAAGAAGAATCTGGAAAAAGACTTGCTCAGGTTGTCAGCGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAACCAGGCTTCAGCTTCTTTCGAGAACCAACTGTCTCAAGAAGCCAGTGATGCTGAAAAGGCTAGGAAGGTGTGGGAAGTCAGCGAAAAGCTTGTCGGCTTGGCTTAG 1185 46.84 MALQAASIVSSAFSVPKEGKSSAAFMDSSVFGVSFSEHLKVEYGSSALKCKRAGVVKVQAVATTTPAVNTAAPAGKKTLRKGSVIVTGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKSAGISKENYTIMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYFPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLEDLNKSDYPSRRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGFVSEEESGKRLAQVVSEPSLTKSGVYWSWNQASASFENQLSQEASDAEKARKVWEVSEKLVGLA 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 644040 646135 + Conep06aG0013200.1 Cone6ag0131 439015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0131 394 Gene3D - 69 394 - -
Cone6ag0131 394 CDD LPOR_like_SDR_c_like 81 393 - -
Cone6ag0131 394 Pfam short chain dehydrogenase 84 226 IPR002347 -
Cone6ag0131 394 NCBIfam protochlorophyllide reductase 80 394 IPR005979 GO:0016630(InterPro)
Cone6ag0131 394 PANTHER PROTOCHLOROPHYLLIDE REDUCTASE C, CHLOROPLASTIC 1 394 IPR005979 GO:0016630(InterPro)
Cone6ag0131 394 PRINTS Glucose/ribitol dehydrogenase family signature 291 308 IPR002347 -
Cone6ag0131 394 PRINTS Glucose/ribitol dehydrogenase family signature 83 100 IPR002347 -
Cone6ag0131 394 PRINTS Glucose/ribitol dehydrogenase family signature 158 169 IPR002347 -
Cone6ag0131 394 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 79 361 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0131 K00218 - - mdm:103430380 661.759
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0131 Cone-Chr6:644040 Cone9ag0789 Cone-Chr9:3786302 1.06E-27 dispersed
Cone9ag0156 Cone-Chr9:691074 Cone6ag0131 Cone-Chr6:644040 7.82E-166 transposed
Cone14ag1074 Cone-Chr14:9013256 Cone6ag0131 Cone-Chr6:644040 2.98E-241 wgd
Cone15ag1067 Cone-Chr15:8813642 Cone6ag0131 Cone-Chr6:644040 5.16E-242 wgd
Cone6ag0131 Cone-Chr6:644040 Cone9ag0155 Cone-Chr9:690568 1.71E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g260 Blo03g00643 Blo03g01537 Bda07g00287 . . Bpe08g01033 . . . . Cma01g01197 . Car01g01022 Car09g00792 Sed05g2572 Cpe06g00703 Cpe02g00712 Bhi09g03395 Tan01g4418 Cmetu07g1898 . Hepe01g1371 Mch11g1088 . . . . . . . . Cone6ag0131 Cone9ag0156 Cone14ag1074 Cone15ag1067 Lsi04g01319 Csa04g02361 Chy07g00090 . . . . . Bpe11g00490 . Bma07g01189 . . Cmo01g01251 Cmo09g00869 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003266 1 2 1 1 2 1 3 1 1 2 1 0 2 2 1 3 0 4 3 1 1 2 2 2 2 1 2 2 2 2 50