Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0136 ATGGCGAAGAATAAGGAGAGGAAGGTGAGTGTGTCTGGGAAGCCGAAGCATTCACTGGACGCGAACAGGAAAGATGGGAAAGGTGATGCTCGTAGCGGCGCCACCGTCCGGCGGCTCAAGATGTACAAGACCAGGCCTAAGCGTGACCGGAAAGGAAAGGTGCTGAGGAATGAGTACCAGTCCAGTGAGTTGCCCAATACGCGAATCCAGCCTGATCGCAGATGGTTCGGGAATACTCGTGTTGTGAATCAGAAAGAGCTTGAAATTTTCCGAGAAGAGCTACAAAACCGGATGTCAAGTAGTTACAATGTGATTTTGAAGGAAAGGAAACTTCCATTGTCTCTCTTGAGTGACCACCAGAAGCAAGCCAGAGTTCATCTTCTGGATACAGAGCCCTTTGAGGATGCATTTGGACCAAAGAAAAAAAGGAAGCGCCCAAGGCTCTTAGCTGCTGATTATGAGTCGTTACTTAAGAAAGCAGATGGTTCTCAAGATGCTTTTATGGAGAATCACGCTGATTATGAAACAGCAGAAGGGATTGAAGAGGATGGGGTTAGGGACCTAGTTCGGCATACAATGTTTGAGAAGGGTCAAAGTAAACGTATCTGGGGTGAGCTTTACAAAGTCATTGATTCTTCAGATGTTGTTGTCCAGGTGTTGGATGCAAGGGATCCTCAAGGGACTAGATGTTATCATTTGGAGAAGCATTTGAAAGAGCATTGCAAACATAAGCACATGGTTCTGTTGCTAAATAAGTGTGATTTGGTTCCTGCTTGGGCAACAAAAGATTGGCTTAGAGTGTTATCTAAGGAATATCCAACATTAGCATTTCATGCAAGCATCAACAAATCCTTTGGAAAGGGTTCTCTTCTATCGGTGTTGAGACAATTTTCACGGTTAAAAGCTGACAAGCAAGCAATATCAGTCGGATTTGTTGGATATCCCAATGTTGGAAAGTCCTCTGTGATCAACACGCTGCGGACAAAGAATGTTTGTAAGGTCGCCCCTATCCCTGGGGAGACCAAAGTGTGGCAGTACATAACTCTCACGAAGAGGATATTTCTCATCGATTGCCCTGGAGTTGTTTACCAAAATAGGGACACTGAAACAGATATTGTGCTGAAAGGAGTGGTCCGTGTCACAAATTTGGAGGATGCTTCTGAACACATAGGAGAAGTTTTGAAACGTGTGGATAAAAAGCACTTGGAAAGAGCATACAGAATAACAGAGTGGAAGGACGAATATGACTTCTTAGTTCAGCTATGCATACTGTCCGGAAAATTACTAAAGGGTGGTGAACCGGACTTAACAACAGCAGCAAAGATGGTGCTACATGACTGGCAGAGGGGTAAAATTCCCTTCTTTGTCAAGCCTCCTCGAGAAGCAGCTGCTGCGGAAGCTACCAAGGAGGAATCTAAGGATAATGATCTGACCAACGATGCTGGGGTTGATACCAGCAAGGCATCAGCAGCTTTTAAAGTCATTGCACATGTCGTAACATCTCAGCAGGAAAGAAGCATTCCAGTTCAAAGAGATCTGTTCAGTGAAACTGAGTTGAAGGGTGAGGCCTCCTCCAATCAAGCCCCCAGCTCTGAGGATGATGACGAAGATGAGGATGAAGCTTCCGAAAAGTCTCCCAGCTCTGATTTTGCGGACGAAGACGAGCATCCTGGTACTGAATGA 1683 45.34 MAKNKERKVSVSGKPKHSLDANRKDGKGDARSGATVRRLKMYKTRPKRDRKGKVLRNEYQSSELPNTRIQPDRRWFGNTRVVNQKELEIFREELQNRMSSSYNVILKERKLPLSLLSDHQKQARVHLLDTEPFEDAFGPKKKRKRPRLLAADYESLLKKADGSQDAFMENHADYETAEGIEEDGVRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCYHLEKHLKEHCKHKHMVLLLNKCDLVPAWATKDWLRVLSKEYPTLAFHASINKSFGKGSLLSVLRQFSRLKADKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNRDTETDIVLKGVVRVTNLEDASEHIGEVLKRVDKKHLERAYRITEWKDEYDFLVQLCILSGKLLKGGEPDLTTAAKMVLHDWQRGKIPFFVKPPREAAAAEATKEESKDNDLTNDAGVDTSKASAAFKVIAHVVTSQQERSIPVQRDLFSETELKGEASSNQAPSSEDDDEDEDEASEKSPSSDFADEDEHPGTE 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 662270 665879 + Conep06aG0013700.1 Cone6ag0136 439020

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0136 560 MobiDBLite consensus disorder prediction 461 482 - -
Cone6ag0136 560 Pfam NGP1NT (NUC091) domain 41 166 IPR012971 -
Cone6ag0136 560 MobiDBLite consensus disorder prediction 1 36 - -
Cone6ag0136 560 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 203 364 IPR030378 GO:0005525(InterPro)
Cone6ag0136 560 PRINTS GTP1/OBG GTP-binding protein family signature 355 370 IPR006073 GO:0005525(InterPro)
Cone6ag0136 560 PRINTS GTP1/OBG GTP-binding protein family signature 309 329 IPR006073 GO:0005525(InterPro)
Cone6ag0136 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 382 IPR027417 -
Cone6ag0136 560 CDD NGP_1 205 361 IPR024929 GO:0005730(InterPro)
Cone6ag0136 560 MobiDBLite consensus disorder prediction 504 560 - -
Cone6ag0136 560 PANTHER GTP-BINDING PROTEIN-RELATED 16 550 IPR050755 GO:0005730(PANTHER)
Cone6ag0136 560 MobiDBLite consensus disorder prediction 544 560 - -
Cone6ag0136 560 FunFam Nuclear/nucleolar GTPase 2 202 364 - -
Cone6ag0136 560 MobiDBLite consensus disorder prediction 1 64 - -
Cone6ag0136 560 FunFam Nucleolar GTP-binding protein 2 366 456 - -
Cone6ag0136 560 Gene3D - 193 363 IPR027417 -
Cone6ag0136 560 MobiDBLite consensus disorder prediction 529 543 - -
Cone6ag0136 560 MobiDBLite consensus disorder prediction 463 480 - -
Cone6ag0136 560 Pfam 50S ribosome-binding GTPase 309 368 IPR006073 GO:0005525(InterPro)
Cone6ag0136 560 Gene3D - 364 456 IPR023179 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0136 K14537 - - csv:101207909 859.751
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0856 Cone-Chr12:7688030 Cone6ag0136 Cone-Chr6:662270 3.87E-56 dispersed
Cone1ag0561 Cone-Chr1:5712575 Cone6ag0136 Cone-Chr6:662270 1.01E-27 dispersed
Cone5ag1314 Cone-Chr5:7615790 Cone6ag0136 Cone-Chr6:662270 7.25E-28 dispersed
Cone6ag0136 Cone-Chr6:662270 Cone8ag0886 Cone-Chr8:8665824 9.54E-57 dispersed
Cone6ag0136 Cone-Chr6:662270 Cone9ag0161 Cone-Chr9:707963 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g247 . Blo03g01541 . Bda09g00500 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0136 Cone9ag0161 . . . . . . . . . . . . Bma07g01183 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006194 1 2 1 2 0 1 1 1 1 2 1 1 1 0 1 1 1 2 1 1 1 1 1 1 1 2 1 5 1 1 37