Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0142 ATGGATATGGAGGTGATCGAAATCCCGCCCTCAAAGATGCTCGAACATAAACAGATTGTTGCGAAGGATGTAGCTGAAGTTGACAACAATGAAGATCCTGCTGATGCCATGTTGATTTGTGAGAAATTTGACGGAAGCAACAAAGGAAAGGGAATAGTGTTATTTTCCGATAACTGTGATGACGATAAATTGCAGGAATCCTTACCCAGTTCTTTTGGTCTTGCTGTGAATGGGGCCGAATTAATGAATTATTGTCATAGTTCTAATTTTCCTTACAATGACGATGAGTGCGCTAATTTTTTACCTGAAGATACCACTGATGTTGATGAATACTCGATGTTGCAAGCCCATTTTGATCACATGGATATTCCTCCTGGAGTAGAGGCACCCATTCCTTGGTTTTCCGAATCCACTCAAACTATAATTAAGCCAGTTGCTGGAAGTAGTTCAGTGTATACAGAGAATCAAATCAAATCACGTTCTGTAGGTCTCAATCAAAATACCCCATCTTCCTCTTCATGTGTGTCAGAGCCTGCTCTCTTGAATTTGGAGGCTGATTCAGTCAATAGTTCAGACCTGCAAACCCAAAGAGATGCTATTCATCATATTGTTGGAGTTGATACGCGGTTACCTTCACAAGCTGGTCACAGTAAGAAAAAATCTATCGCTTCTCTGTACAGGGAGAAATTCAGTGGTTGGCAACATAAGGAATATTCAAAAGATCCCTCTTTTGGTGTCGGGTCATCTCTATCCAAAAATCTATGGTTTTTGGACCCTTTGAGGATCAAAAGGAAGAAAGCTATGTCAAATAGTTCAACTAAATTGACTTCAGTTACCCAACTGGATGCAATGAATTCTATCCCTGCTATTTTAAAGGAGCAAGACGCTACTACATATCAGCAGCAGTTAGATCTCTCAAAACTCTTAATGCAAATAGAAACATCAAATTACCCTTCTGGAACAGGATCAACAATGCCCATTTGGCAGGAGTCTTTCAAACCCAAGAAGATTCCTAATTTAGCACATTCAAGTCGAAGTATATATGATGCATTTGATCCTCTTCAGTTCCCCCCTGGAGAAGTTGTGGACAATTTTTCTGCGGATCAGGATTTCGCCCGAAAGCGAAAGAATGTTGCTTCTGAGGGAAGCTCAACAACACCTCCTGTACCAATTTGTGGTGGGAATATGGATGAAATTTTAGGTAAGTACATGCAGTTTAACAAATTTGATACTGTTGAAGATCATTCGGACCATCATTATGCCAGCTGTGAGTCTTCAGTGAAACAGTCTTCAAAGAAGTGGACGAAGAGAATTCAGGAGGAGTGGAAGATTCTGGAGAACGGTTTGCCAGATACTATTTTTGTTCGCGTGTATGAAGCAAGGATGGATCTTTTGAGGGCTGTAATTGTTGGAGCGGAGGGTACTCCTTACCAGGATGGCCTCTTTTTCTTCGATTTTCTTTTCCCTAGTGGCTATCCTAACGTGCCCCCACTGGTCTACTACCAAGCTGGTGGCCTCAGACTAAATCCAAACTTGTATAGCTGTGGGAAAGTATGCCTCAGTCTACTCAATACCTGGTCCGGAAACAATAATGAGAAATGGTTGCCAGGTGTATCAACAATCTTACAAGTTCTGGTCTCCATTCAAGGCTTAATCTTGAATGAAAAGCCTTACTTTAATGAGCCTGCATATGCATGTAAGAGTGGGACTCCACTTGGTGAAGTCCAGTCCCAACAGTACAATGACAGCATATATCCTCTATCTCTGAAAACAATGATTTACAAAATGCAAAGGCCTCCAAAGCATTTCGAGGAATTTGTTATTGGGCACTTCTGCAATTGTGCTCGTGATATTCTGACAGCATGTAAAGGATCTATGGATCATGCTCGATTTGGTCATCCACATGATGTAGATTACAGGTTTGGAATGCAATTTACAGAGTCGTTGCAGCCGTATATGGGAATGCTTGTCAAAGAATTTACACGCATTGGGGTTACGGACTGCGAGAAATTCCTTTCTTCCACGCCTAATGAGGATGATTCTATAGCTGTTGTTCCTCCAGCGTCATTACGACATAAACCTGGCAATGAAGTGAAGGGTTCGATTATCTGA 2112 41.38 MDMEVIEIPPSKMLEHKQIVAKDVAEVDNNEDPADAMLICEKFDGSNKGKGIVLFSDNCDDDKLQESLPSSFGLAVNGAELMNYCHSSNFPYNDDECANFLPEDTTDVDEYSMLQAHFDHMDIPPGVEAPIPWFSESTQTIIKPVAGSSSVYTENQIKSRSVGLNQNTPSSSSCVSEPALLNLEADSVNSSDLQTQRDAIHHIVGVDTRLPSQAGHSKKKSIASLYREKFSGWQHKEYSKDPSFGVGSSLSKNLWFLDPLRIKRKKAMSNSSTKLTSVTQLDAMNSIPAILKEQDATTYQQQLDLSKLLMQIETSNYPSGTGSTMPIWQESFKPKKIPNLAHSSRSIYDAFDPLQFPPGEVVDNFSADQDFARKRKNVASEGSSTTPPVPICGGNMDEILGKYMQFNKFDTVEDHSDHHYASCESSVKQSSKKWTKRIQEEWKILENGLPDTIFVRVYEARMDLLRAVIVGAEGTPYQDGLFFFDFLFPSGYPNVPPLVYYQAGGLRLNPNLYSCGKVCLSLLNTWSGNNNEKWLPGVSTILQVLVSIQGLILNEKPYFNEPAYACKSGTPLGEVQSQQYNDSIYPLSLKTMIYKMQRPPKHFEEFVIGHFCNCARDILTACKGSMDHARFGHPHDVDYRFGMQFTESLQPYMGMLVKEFTRIGVTDCEKFLSSTPNEDDSIAVVPPASLRHKPGNEVKGSII 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 723700 727587 - Conep06aG0014300.1 Cone6ag0142 439026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0142 703 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 108 677 - GO:0061631(PANTHER)
Cone6ag0142 703 FunFam Probable ubiquitin-conjugating enzyme E2 23 396 664 - -
Cone6ag0142 703 Pfam Ubiquitin-conjugating enzyme 437 562 IPR000608 -
Cone6ag0142 703 SUPERFAMILY UBC-like 418 602 IPR016135 -
Cone6ag0142 703 CDD UBCc 435 563 IPR000608 -
Cone6ag0142 703 SMART ubc_7 436 593 - -
Cone6ag0142 703 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 433 593 IPR000608 -
Cone6ag0142 703 Gene3D Ubiquitin Conjugating Enzyme 397 666 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0142 K10581 - - mdm:103427325 536.184
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0142 Cone-Chr6:723700 Cone8ag1294 Cone-Chr8:10596994 1.70E-77 dispersed
Cone1ag0164 Cone-Chr1:916577 Cone6ag0142 Cone-Chr6:723700 1.82E-72 wgd
Cone12ag1462 Cone-Chr12:10490072 Cone6ag0142 Cone-Chr6:723700 3.41E-101 wgd
Cone14ag1066 Cone-Chr14:8974807 Cone6ag0142 Cone-Chr6:723700 4.15E-155 wgd
Cone15ag1055 Cone-Chr15:8740129 Cone6ag0142 Cone-Chr6:723700 8.15E-151 wgd
Cone5ag1708 Cone-Chr5:12140010 Cone6ag0142 Cone-Chr6:723700 1.59E-71 wgd
Cone6ag0142 Cone-Chr6:723700 Cone6ag1016 Cone-Chr6:5680063 7.74E-75 wgd
Cone6ag0142 Cone-Chr6:723700 Cone8ag1509 Cone-Chr8:11416383 4.15E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g227 . . . . . . . Bma13g00958 . . Cma01g01207 Cma09g00867 Car01g01032 Car09g00780 Sed05g2568 Cpe06g00690 Cpe02g00703 Bhi09g03415 Tan01g4399 Cmetu07g0826 . . Mch11g1071 . Cla11g01764 Cam11g1830 Cec11g1851 Cco11g1858 Clacu11g1991 Cmu11g1800 Cre11g2207 Cone6ag0142 . Cone14ag1066 Cone15ag1055 . Csa04g02346 Chy07g00079 . . . . . . Bpe01g00429 . . . Cmo01g01260 Cmo09g00856 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004169 0 6 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 0 1 1 1 1 1 1 1 5 1 2 41