Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0153 ATGGAGGTTCAAAGATCTGTCTGTCTTCCTCTACTCCTTCTGCTTTGTAGTTTGTTTTCCTTCTCAGACGCATTCAAGTACTATGTCGGTGGAAGAGACGGATGGGTCTTGAACCCTTCTGAGAGTTACGATCACTGGGCTTCACGTAACAGATTTCTTGTCGGCGACATACTCTTTTTTAGGTATAAGCAAGGATCGGACTCTGTTTTGGTAGTGAATAAGGACGACTACGACAAATGCAACAGGAACAACCCTACACAGAAACTGGAAGGAGGTGATTCAGAATTCACCATTGACAGGCCAGGACCTTATTACTTCATTAGTGGAAAGGAGGGAAATTGTGAAAAGGGCCAGAAACTAGGCCTTGTCGTTATTACCCCTAGAAAGCCAAAATCTCAGTCCACTCCACCGTCTTCTTCCACTCCCAAACCCTCCCCTGCACCCACTGCTCACCCTCCCGTTCCCGTTACGCCGGCACCAAAAGGGGCAGCCAAGTCGCCACCACCCACGGCTGAGTCACCCAAATCCGGTACTTCACCGTCTCCCTCAGGTGGGTCAGAAACACCCAAAAAGGCTCCTTCGCCATCAAGCCATCAGACTTCTCCATCTCCTTCAGGAGCAGAGACGCCAAAAACAGCTCCATCTCCAGCTAGCCACTCTGCTTCTTCTCCTACTCCTTCACAGTCTAAATCTCCATCTCCAGGATCTGCAGGCTCTGGATCACCTAAAAGTGCATCATCTCCGTCAAGCTTCAATATTTCCCCATCATCTTCCGGTACTAGCACTCCATCTCCGTCAGGCTCCTCCATCTCTCCATTACCTTCTGGTTCTCATACACCATCTCCTAAAAAAGCTCCATCTCCGTCAGGCTACTCCATCTCTCCATCACCTTATGGTTCTCATACACCATCTCCTATTAAAGCTCCATCTCCGTCAGGCTACTCTATCTCTCCATCACCTTATGGTTCCAAAACACCATCTCCTATAAAAGCTCCATCTCCATCAGGCTCCTCTGCTTCTTCCCCTGGTCCTGCAGAGTCCAAAACGCCAGTAAGTTCTCCGTATGGGTCTCCGGTCGGTACATCACCGAGAGGATCGCCGTTCGGGTCGCCAAATTCTAAATCACCAGAAGGATCTCCGTTCGGGTCACCAAATTCTAAATCACCAGAAGGATCTCCGTCCGGGTCAGCAAATTCTAAATCACCAGAAGGATCTCCGTCCGGGTCAGCACCGTTTGGGTCACCCACTACATCAATAACAGCCCCTGCTCTAGCTCCATCCTTCGATTCCCCTCCAGCCCCCCCTCCATCTTCATCGCCTGCGCCGGGATCCTCATCCTCTCCGTCTCCATCTTCGTCTCCACCTTCGTCTCCGTCGGCAAATGTTCTGGCGCCGGCACCTGCCAAGTCGTCTGCATGGACTCTAACTCCCTCTGGTTGTATGCTATTTACGGTTTCAGTTGCATTTAGCTTCCTCGTCAATGGTATGATTAGTACTACAACTCTTGCTTAA 1512 50.33 MEVQRSVCLPLLLLLCSLFSFSDAFKYYVGGRDGWVLNPSESYDHWASRNRFLVGDILFFRYKQGSDSVLVVNKDDYDKCNRNNPTQKLEGGDSEFTIDRPGPYYFISGKEGNCEKGQKLGLVVITPRKPKSQSTPPSSSTPKPSPAPTAHPPVPVTPAPKGAAKSPPPTAESPKSGTSPSPSGGSETPKKAPSPSSHQTSPSPSGAETPKTAPSPASHSASSPTPSQSKSPSPGSAGSGSPKSASSPSSFNISPSSSGTSTPSPSGSSISPLPSGSHTPSPKKAPSPSGYSISPSPYGSHTPSPIKAPSPSGYSISPSPYGSKTPSPIKAPSPSGSSASSPGPAESKTPVSSPYGSPVGTSPRGSPFGSPNSKSPEGSPFGSPNSKSPEGSPSGSANSKSPEGSPSGSAPFGSPTTSITAPALAPSFDSPPAPPPSSSPAPGSSSSPSPSSSPPSSPSANVLAPAPAKSSAWTLTPSGCMLFTVSVAFSFLVNGMISTTTLA 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 768003 770049 - Conep06aG0015400.1 Cone6ag0153 439037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0153 503 MobiDBLite consensus disorder prediction 127 470 - -
Cone6ag0153 503 CDD OsENODL1_like 25 125 IPR041846 -
Cone6ag0153 503 FunFam Early nodulin-like protein 1 24 129 - -
Cone6ag0153 503 PANTHER BLUE COPPER PROTEIN 19 167 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Cone6ag0153 503 MobiDBLite consensus disorder prediction 137 167 - -
Cone6ag0153 503 SUPERFAMILY Cupredoxins 24 124 IPR008972 -
Cone6ag0153 503 MobiDBLite consensus disorder prediction 176 424 - -
Cone6ag0153 503 Pfam Plastocyanin-like domain 35 118 IPR003245 GO:0009055(InterPro)
Cone6ag0153 503 Gene3D - 24 127 IPR008972 -
Cone6ag0153 503 MobiDBLite consensus disorder prediction 427 455 - -
Cone6ag0153 503 ProSiteProfiles Phytocyanin domain profile. 25 126 IPR003245 GO:0009055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0153 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0978 Cone-Chr17:7553243 Cone6ag0153 Cone-Chr6:768003 4.35E-29 dispersed
Cone20ag0319 Cone-Chr20:1416036 Cone6ag0153 Cone-Chr6:768003 6.46E-31 dispersed
Cone12ag1470 Cone-Chr12:10517081 Cone6ag0153 Cone-Chr6:768003 1.16E-41 wgd
Cone6ag0153 Cone-Chr6:768003 Cone9ag0178 Cone-Chr9:788605 7.75E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g199 . . . Bda09g00514 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0153 Cone9ag0178 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone12ag1470 . 12 143 Phytocyanin Superfamily AT5G53870 54.5 1.7e-36 151.0
Cone6ag0153 . 11 136 Phytocyanin Superfamily AT4G27520 54.8 2.8e-36 150.2
Cone7ag0492 . 34 153 Phytocyanin Superfamily AT3G01070 62.8 3.5e-37 152.1
Cone4ag0517 . 34 132 Phytocyanin Superfamily AT3G01070 69.0 6.0e-37 151.4
Cone20ag0319 . 13 172 Phytocyanin Superfamily AT2G25060 54.9 5.1e-42 168.3
Cone17ag0978 . 12 168 Phytocyanin Superfamily AT2G25060 51.5 1.4e-39 160.2
Cone7ag0492 . 27 181 Phytocyanin Superfamily AT5G15350 58.2 4.8e-50 194.9
Cone4ag0517 . 13 149 Phytocyanin Superfamily AT5G15350 58.4 7.2e-46 181.0
Cone20ag0319 . 17 172 Phytocyanin Superfamily AT4G31840 53.5 8.5e-42 167.5
Cone17ag0978 . 16 170 Phytocyanin Superfamily AT4G31840 52.3 6.1e-40 161.4
Cone12ag1470 . 12 143 Phytocyanin Superfamily AT5G53870 54.5 1.7e-36 151.0
Cone6ag0153 . 11 136 Phytocyanin Superfamily AT4G27520 54.8 2.8e-36 150.2
Cone8ag0534 . 30 170 Phytocyanin Superfamily AT1G64640 60.1 1.5e-39 160.2
Cone20ag0319 . 13 172 Phytocyanin Superfamily AT2G25060 54.9 5.1e-42 168.3
Cone17ag0978 . 12 168 Phytocyanin Superfamily AT2G25060 51.5 1.4e-39 160.2
Cone20ag0319 . 17 172 Phytocyanin Superfamily AT4G31840 53.5 8.5e-42 167.5
Cone17ag0978 . 16 170 Phytocyanin Superfamily AT4G31840 52.3 6.1e-40 161.4
Cone7ag0492 . 34 153 Phytocyanin Superfamily AT3G01070 62.8 3.5e-37 152.1
Cone4ag0517 . 34 132 Phytocyanin Superfamily AT3G01070 69.0 6.0e-37 151.4
Cone7ag0492 . 27 181 Phytocyanin Superfamily AT5G15350 58.2 4.8e-50 194.9
Cone4ag0517 . 13 149 Phytocyanin Superfamily AT5G15350 58.4 7.2e-46 181.0
Cone5ag1429 . 1 225 Phytocyanin Superfamily AT1G08500 54.4 7.8e-64 241.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0053920 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1