Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0157 ATGGTGTTTCTAGGGTTTCTTCCGACAACTTTCTTCAACTGGGTATTCTTAACCTGCCTGCTTTCTTCATCCACGTGTCTGAAAACCCTGGCCCAGGCCTGTGATTCCAGTGATTTTGTGGCCTTGAAGAACTTTGCAGGAAACCTCACAAATGGCTCTATCATTTCAACATGGTCTAATGAATCAGCCTGCTGCAAGTGGGATGGTGTTTTTTGTGGGAATTCAACCAGTGGATCACTCACGAACAGAGTTACTAAATTGATACTTCCCAATATGGGTCTTAAAGGAATCATTTCAGCCTCATTGGGTAGATTAGATCAGCTAATATGGCTTGATCTTTCTTACAATCATCTTGAAGGAAAGTTGCCTGCAGGATTTTCAGACTTGAAGGAGCTCAATGTTCTTGATTTGAGCCATAACATGTTATCAGGACCAGTTGATGAAGCCCTTTCTGGGTTGGCTTCTGTTCAAACACTCAATATCTCTAGCAATTCATTCACTGGGAAATTATTTGAGCTCAATGGATTTCGATATCTGAATGTTCTTAACGTAAGCAAAAACTCTTTTTCTGGCTGGTTAGATTCGAAATTATGCAGTTCTTCACATGGGATTACTATTCTTGATTTGTCTGAGAACCTTTTTTCGGGTAGTCTTGAAAGCTTGGAGAACTGCAGCTCATCTCTTCAACAATTCCATGCCGATCACAATTTCTTCGAAGGGAATCTTCCAGATTCTTTGTACTCATTGTCGGCTTTAGAGCAACTTTCAATATCTCGGAATAATTTCTCAGGCTTGTTAAGCATGGAGTTGAGTAAGCTCACTCGACTTAAAAACTTGATAATTTTTGGTAATCAACTTTCTGGTGAAATTCCGGATGTGTTTGAGAACCTTCCACAACTAGAAGAGTTTGTTGCATATTCGAATTTGTTTTCCGGACCATTGCCTTCGACTTTATCACTATGCTCAAAGCTTAGAGTTCTTGAACTTAGGAACAATTCTCTTAACGGTTTTATCGATCTTAACTTTACCGGATTAACACAACTCTCTACCCTTGATCTTGCTTCTAATCATTTTAATGGGTCCCTTCCAAATACTCTATCCAATTGTCATGAATTGAAAGTTCTGAGCTTTTCTAGGAATCATTTAACCGGCACAATACCTGAAAATTACACAAAGCTCTCATCTTTATGGTTTCTGTCCTTGTCCAACAATAGCTTTGTGAATCTGTCTGATGCATTATCTGTTCTACAAGAATGCAAAAATCTAACCTTTCTTATTCTTACTAAGAATTTTCATGGCGAGGATTTTCCTAGTAATGTGACTGGTTTTGAAGGGTTATCGCTCTTAGCACTTGGGAATTGTGGTCTTAAAGGTCAAATCCCAGTTTGGTTATTAACTTGCAAGAAATTAAGTGTCCTTGATTTGTCTTGCAATCACCTTCATGGTAGTATTCCTTTCTGGATTGGTGAGATGGAGAATTTGTTCTATTTAGAATTCTCAAACAATTCTCTCACCGGAGAAATCCCAAAAAGCTTGACGGGTCTCAAGGCCCTTATTTCTGCAAACAGCAGTCGGCAATATATGACAGCTTCTGCCGGAATTCCACTATACGTAAAGCGAAATCAGAATTCGAGCGGTTTACAATACAACCAAGCTTCAAGTTTTCCTCCATCAATTTACTTGAACAATAATGGAATAAACGGAACAATCTGGCCCGAAATCGGGCAACTGAAACAGCTCCATGCTTTGGATTTGAGCCGAAACAACATTACAGGGACAATCCCTAGCTCCATTTCAGAGATGGAGAATCTGGAACTGTTAGATTTATCGAATAACAATCTTTACGGATTGATTCCTCCATCTTTTAACAAGCTCACATTCTTGTCAAAGTTTAGTGTGGCAAACAATCATTTGAAGGGAGCAATACCAACTGGAGGACAATTCTCAAGCTTTCCCAGCTCAAGCTTTGAGGGTAATCCAGGACTTTGCGGAGAAATCGAATTTCAATGTGGTGATGTTAACGGTACAGATACAAAGCCCCAAAACCGAACAAGTTCAAAAACTAAATTCGGTATAATCAGCATTCTTTGCATTACAATCAGTATAGGAATCAGCATTGCCTTGCTCCTTACTGTTGTTCTACTCAAGATCTTAAGGAAGGATGTTAGAAATCAGACCGAGGATTTCACTGAAGAATTCACTATGCCACCGAGATTATCCGAATCTCTAGGGTCTTCCAAATTGGTGCTTTTTCATATTACAGATTGCAATGATCTTACCATAGTAGACTTGATGAAAGCTACTAGCAATTTTAATCAAGCCAATATAATTGGTTGTGGTGGATTTGGTCTGGTCTACAAAGCCAATTTCCCAAATGGCTGTAAAGCTGCCGTGAAAAGACTTTCTGGAGATTGTGGTCAGATGGAAAGGGAATTCCAAGCCGAGGTGGAGGCCCTCTCAAGAGCTCAACACAAGAACCTTGTCTCTCTCCAAGGATATTGCCGGCACGGAAATGACAGGCTGTTAATCTATTCCTACATGGAAAACAGGAGTCTTGACTATTGGCTTCATGAAAGTGAAGATGGAGGTTCATTTCTAAAATGGGATCTTAGACTCAAAATCGCCCAAGGAGCGGCTCGAGGATTAGCCTACTTGCATGGAGAATGCAAGCCGAACATTATCCACCGTGATGTGAAATCAAGCAATGTGCTTTTGGATGAACGGTTTGAGGCCCATCTTGCTGATTTTGGCCTGGCCCGCCTACTTCATCCTTATGATACGCATGTCACGACGGATTTGGTTGGGACACTGGGGTATATTCCTCCAGAATATAGTCAGACATTAACTGCAACATGCAGGGGCGATGTCTATAGTTTCGGAGTAGTTCTGCTTGAGCTTCTTACAGGAAGGAGGCCGGTTGAAGTGCGCAAAGGGAAAAATTGTAGGGATTTAGTGTCTTGGGTTTTTCAGATGAAAGGTGAGAGGAGGGAAGAGGAAATTATTGATTCTGGGATTTGGAATAATGAGCATGAGAAGCAGGTTTTGGAAGTGCTTACTATTGCTTGTAAATGCTTAGATAAAGCTCCAAGGCAGAGACCTGGTATTGAAGAGGTTGTTTCATTGCTTGATGGTGTTGGATTTCAGGTTTCTCAACAATGA 3159 40.52 MVFLGFLPTTFFNWVFLTCLLSSSTCLKTLAQACDSSDFVALKNFAGNLTNGSIISTWSNESACCKWDGVFCGNSTSGSLTNRVTKLILPNMGLKGIISASLGRLDQLIWLDLSYNHLEGKLPAGFSDLKELNVLDLSHNMLSGPVDEALSGLASVQTLNISSNSFTGKLFELNGFRYLNVLNVSKNSFSGWLDSKLCSSSHGITILDLSENLFSGSLESLENCSSSLQQFHADHNFFEGNLPDSLYSLSALEQLSISRNNFSGLLSMELSKLTRLKNLIIFGNQLSGEIPDVFENLPQLEEFVAYSNLFSGPLPSTLSLCSKLRVLELRNNSLNGFIDLNFTGLTQLSTLDLASNHFNGSLPNTLSNCHELKVLSFSRNHLTGTIPENYTKLSSLWFLSLSNNSFVNLSDALSVLQECKNLTFLILTKNFHGEDFPSNVTGFEGLSLLALGNCGLKGQIPVWLLTCKKLSVLDLSCNHLHGSIPFWIGEMENLFYLEFSNNSLTGEIPKSLTGLKALISANSSRQYMTASAGIPLYVKRNQNSSGLQYNQASSFPPSIYLNNNGINGTIWPEIGQLKQLHALDLSRNNITGTIPSSISEMENLELLDLSNNNLYGLIPPSFNKLTFLSKFSVANNHLKGAIPTGGQFSSFPSSSFEGNPGLCGEIEFQCGDVNGTDTKPQNRTSSKTKFGIISILCITISIGISIALLLTVVLLKILRKDVRNQTEDFTEEFTMPPRLSESLGSSKLVLFHITDCNDLTIVDLMKATSNFNQANIIGCGGFGLVYKANFPNGCKAAVKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLQGYCRHGNDRLLIYSYMENRSLDYWLHESEDGGSFLKWDLRLKIAQGAARGLAYLHGECKPNIIHRDVKSSNVLLDERFEAHLADFGLARLLHPYDTHVTTDLVGTLGYIPPEYSQTLTATCRGDVYSFGVVLLELLTGRRPVEVRKGKNCRDLVSWVFQMKGERREEEIIDSGIWNNEHEKQVLEVLTIACKCLDKAPRQRPGIEEVVSLLDGVGFQVSQQ 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 780724 783882 + Conep06aG0015800.1 Cone6ag0157 439041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0157 1052 Gene3D Phosphorylase Kinase; domain 1 738 846 - -
Cone6ag0157 1052 FunFam Nuclear pore complex protein NUP107 35 195 - -
Cone6ag0157 1052 SUPERFAMILY Protein kinase-like (PK-like) 751 1042 IPR011009 -
Cone6ag0157 1052 SUPERFAMILY L domain-like 457 663 - -
Cone6ag0157 1052 Pfam Protein kinase domain 772 1039 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0157 1052 Gene3D Ribonuclease Inhibitor 38 153 IPR032675 -
Cone6ag0157 1052 CDD STKc_IRAK 777 1044 - -
Cone6ag0157 1052 SMART serkin_6 771 1042 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0157 1052 ProSitePatterns Protein kinases ATP-binding region signature. 777 799 IPR017441 GO:0005524(InterPro)
Cone6ag0157 1052 SUPERFAMILY L domain-like 34 313 - -
Cone6ag0157 1052 PANTHER OS04G0122200 PROTEIN 51 191 IPR051809 -
Cone6ag0157 1052 FunFam Leucine-rich repeat receptor-like protein kinase 847 1052 - -
Cone6ag0157 1052 Gene3D Ribonuclease Inhibitor 154 410 IPR032675 -
Cone6ag0157 1052 FunFam Phytosulfokine receptor 1 734 846 - -
Cone6ag0157 1052 FunFam Tyrosine-sulfated glycopeptide receptor 1 342 675 - -
Cone6ag0157 1052 ProSiteProfiles Protein kinase domain profile. 771 1052 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0157 1052 PRINTS Leucine-rich repeat signature 601 614 - -
Cone6ag0157 1052 PRINTS Leucine-rich repeat signature 132 145 - -
Cone6ag0157 1052 Gene3D Ribonuclease Inhibitor 559 665 IPR032675 -
Cone6ag0157 1052 Gene3D Transferase(Phosphotransferase) domain 1 847 1048 - -
Cone6ag0157 1052 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Cone6ag0157 1052 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 243 338 - -
Cone6ag0157 1052 Pfam Leucine Rich Repeat 276 297 IPR001611 GO:0005515(InterPro)
Cone6ag0157 1052 Pfam Leucine Rich Repeat 469 490 IPR001611 GO:0005515(InterPro)
Cone6ag0157 1052 Pfam Leucine Rich Repeat 493 515 IPR001611 GO:0005515(InterPro)
Cone6ag0157 1052 SMART LRR_typ_2 345 368 IPR003591 -
Cone6ag0157 1052 SMART LRR_typ_2 393 416 IPR003591 -
Cone6ag0157 1052 SMART LRR_typ_2 577 600 IPR003591 -
Cone6ag0157 1052 SMART LRR_typ_2 601 624 IPR003591 -
Cone6ag0157 1052 SMART LRR_typ_2 129 152 IPR003591 -
Cone6ag0157 1052 SMART LRR_typ_2 273 296 IPR003591 -
Cone6ag0157 1052 SMART LRR_typ_2 105 128 IPR003591 -
Cone6ag0157 1052 SMART LRR_typ_2 249 272 IPR003591 -
Cone6ag0157 1052 ProSitePatterns Serine/Threonine protein kinases active-site signature. 893 905 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag0157 1052 Pfam Leucine rich repeat 83 142 IPR001611 GO:0005515(InterPro)
Cone6ag0157 1052 Pfam Leucine rich repeat 347 405 IPR001611 GO:0005515(InterPro)
Cone6ag0157 1052 Pfam Leucine rich repeat 579 638 IPR001611 GO:0005515(InterPro)
Cone6ag0157 1052 SUPERFAMILY RNI-like 223 520 - -
Cone6ag0157 1052 Gene3D Ribonuclease Inhibitor 411 542 IPR032675 -
Cone6ag0157 1052 ProSiteProfiles Leucine-rich repeat profile. 603 624 IPR001611 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0157 K27626 - - mdm:103413298 1420.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0290 Cone-Chr17:1391782 Cone6ag0157 Cone-Chr6:780724 6.21E-147 dispersed
Cone6ag0157 Cone-Chr6:780724 Cone7ag1042 Cone-Chr7:8010250 1.63E-145 dispersed
Cone14ag0838 Cone-Chr14:5192520 Cone6ag0157 Cone-Chr6:780724 1.89E-72 transposed
Cone15ag0820 Cone-Chr15:5392854 Cone6ag0157 Cone-Chr6:780724 5.07E-72 transposed
Cone14ag1058 Cone-Chr14:8925541 Cone6ag0157 Cone-Chr6:780724 1.70E-237 wgd
Cone3ag1487 Cone-Chr3:33526021 Cone6ag0157 Cone-Chr6:780724 3.83E-75 wgd
Cone6ag0157 Cone-Chr6:780724 Cone9ag0181 Cone-Chr9:798380 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g193 . . . . Bpe09g00240 . . Bma13g00942 Cmo16g00436 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0157 Cone9ag0181 Cone14ag1058 . . . . . . Blo10g00752 . . . . . . . . . . Cma16g00736 . Car16g00368 Cpe14g00338 . . . . . . . . Cla05g01002 . . . . . . . . Chy06g01163 .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82905 PF02365 NAM 4.00E-36 No_clan Cone PK