Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0160 ATGACCGGCAGAGAAATTCTCCACAAGATGAAGGAAAAAGTCGGGTTGGGATCATCAGATACTGATTCCGGAAAAGGAAAGAGCAAGATTTCAAAGAACGTAACACTTGGATTCCACTTGGTTAAGGGAAAATTCCACCCTGCCATGGAAGACTACGTAGTTGCTCAGTTTAAGCAAGTTGATGACCATGAGCTTGGTTTATTCGCAATATTTGATGGCCATTTAAGCCACGATATTCCGGATTACTTACGGTCTCATTTGTTCGACAATATTATCAATGAGCCCTCCTTTTGGACCGAGCCCGAGATTGCGGTTAGGGAAGCATATCGTAGAACCGATGCGTACATTTTGGAGAAGGCAGTTGATTTGGGTAAAGGGGGTTCAACTGCAGTTACGGCTATACTTATCAACTGTCAAAAACTGGTAGTTGCAAATGTAGGTGATTCCCGTGCAGTTATCTGCAGAAACGGTCTTGCCGTACAGTTATCGGTTGACCACGAGCCGAGCATGGAAAGAGAAATCATTGAGAACAAAGGTGGTTTTGTCTCAAACTTTCCTGGAGACGTTCCTCGTGTTGATGGACAATTAGCTGTAGCACGGGCATTCGGCGATAAGAGCTTGAAGAAGCATCTAAGCTCTGAACCTCATGTAATAGTGGAATCTATAAATGAAGCGACAGAGTTTATTATCTTGGCAAGTGATGGATTATGGAAGGTAATGTCGAATCAAGAAGCGGTAGATTTGATCAAACAGATCAATGATGCTCGGGCAGCGGCCAAGCACTTGACTGAAGAAGCTCTTATTAGGAAGAGCACTGATGATATTTCCTGTGTAGTTGTAAGACTCCATTAA 852 43.31 MTGREILHKMKEKVGLGSSDTDSGKGKSKISKNVTLGFHLVKGKFHPAMEDYVVAQFKQVDDHELGLFAIFDGHLSHDIPDYLRSHLFDNIINEPSFWTEPEIAVREAYRRTDAYILEKAVDLGKGGSTAVTAILINCQKLVVANVGDSRAVICRNGLAVQLSVDHEPSMEREIIENKGGFVSNFPGDVPRVDGQLAVARAFGDKSLKKHLSSEPHVIVESINEATEFIILASDGLWKVMSNQEAVDLIKQINDARAAAKHLTEEALIRKSTDDISCVVVRLH 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 787673 789643 - Conep06aG0016100.1 Cone6ag0160 439044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0160 283 CDD PP2Cc 42 282 IPR001932 -
Cone6ag0160 283 SUPERFAMILY PP2C-like 32 283 IPR036457 -
Cone6ag0160 283 Coils Coil 245 265 - -
Cone6ag0160 283 SMART PP2C_4 31 280 IPR001932 -
Cone6ag0160 283 Gene3D - 29 283 IPR036457 -
Cone6ag0160 283 Pfam Protein phosphatase 2C 49 275 IPR001932 -
Cone6ag0160 283 ProSiteProfiles PPM-type phosphatase domain profile. 35 282 IPR001932 -
Cone6ag0160 283 PANTHER PROTEIN PHOSPHATASE 31 280 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone6ag0160 283 FunFam Probable protein phosphatase 2C 39 25 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0169 Cone-Chr15:816568 Cone6ag0160 Cone-Chr6:787673 7.92E-32 dispersed
Cone6ag0160 Cone-Chr6:787673 Cone7ag1594 Cone-Chr7:10900747 1.28E-109 dispersed
Cone6ag0160 Cone-Chr6:787673 Cone8ag1519 Cone-Chr8:11461738 2.65E-135 wgd
Cone6ag0160 Cone-Chr6:787673 Cone9ag0184 Cone-Chr9:805263 2.91E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0160 K17506 - vvi:100241870 445.662