Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0161 ATGGCTGAGGCAGAGATTATAGTAGAGACTACTGGATCGAGGTTTAGTTCATTGGAACTTATTGGTAAAGGATCTTTCGGTGATGTCTACAAGGGGCTTGATAAGGATCTTAACAAAGAAGTTGCTATAAAAGTAATTGATTTGGAAGAAGCGGAGGATGAAATTGAGGACATACAGAAGGAAATTTCTGTTTTGTCACAATGTAGATGTCCCTATATTACTGAGTACTATGGTTCTCATCTTCATGAGACTAAATTATGGATAATAATGGAATACATGGCTGGTGGCTCAGTTGCTGACCTGCTTCAATCCGGACCTCCACTGGATGAAATGTCTATTGCTTGCATTCTATGCGACTTGCTGCATGCTATTAATTATTTGCATAGTGAAGGAAAAATTCACAGGGATATTAAAGCGGCCAATATATTGTTGAGTGAACAAGGTGATGTTAAGGTTGCAGATTTCGGCGTTTCTGCCCAATTAACGAGGACAATATCCAGGAGAAAGACATTTGTAGGAACACCTTTCTGGATGGCCCCAGAGGTAATTCAAAATTCAGATGGGTACGATGAAAAGGCAGATATCTGGTCCCTTGGAATCACGGCTATTGAGATGGCAAAAGGTGAACCTCCGCTTGCTGATCTTCATCCAATGAGAGTTCTCTTTATAATTCCTCGAGAAAATCCACCTCAGTTGGATGAGCATTTCTCTCGTCCTATGAAAGAATTTGTGTCGCTGTGCCTGAAGAAAGTACCTGCTGAGAGACCAAGCGCCAAGGAGCTTTTAAAGCACCGATTTATTAAGAATGCCAAGAAGAGTCCGAGGCTTCTGGAGAGAATAAGTGAGCGTCCAAAGTACCTAATAAAGGAAGATGTGGAAGCATCCAAAAATGGTACTAGAGATATGGGGGAGATGTCTGATACTGTGAAAGTCTCCAGAAATTTAAAAGAAGAGAGTGCCCAAGCCAGTAATCAGGGCAGAACCATAAAAAATGCAGGATGGGACTTCAGCATTGGTGCATCACAGAGTACGGGTACTATTCGAAGTGTTAAACCACCTCCAATTAGGGAAAAGAAGTTTGCACTTTCTTCTGGTCATGCTCCTCCTTTAAGAATTTCAGACAGAGGTAACCCACGTGAAGATACCTTCTCAAGAGATGCTAGAGATTCATTCATTACGGAACGTCTGGAGAATAATAGTGACGACGAAGAGTTTAGTGGCTCAGGAACTGTTGTTATCCGATCCCCTAGAGGATTTTTATCACCTACTCAGTATCATCATCAAAGCACCACGTCTGAGAACACATATGCACCTTTTAAAGACACTTCTTCTAGCGGTACTGTTGTCTTTCGAAGCCAACATGATGATTTGGGTTCTCCTCAGACGCCAAGATCCAGATTGGGAATTCAAGAGAGGACTTCAAGCGCCTCACTCGAAGAAGAGAGTGCAATAAATCTGGCAGAGGCAAAGGCTGCAATGCAAGCAGGATTAAGGAAACCAAATGTTAGAGAAAGGTCTGGCAAGATCAGCAACAAAGGGAAAGAAGATAGAAAAAGAGAGCTAATGACAAGTAGCTCTGATTCTTCCAGACATTCTCATGAATACTATGACGCACCAAAAGCATTGACAAGATCGCAAACAAGTGATGATGAAGAAATAGCTAAAGTAACAGCATCCTCTCCTCCGTTATCAATTTTGCTTATCCCATCCTTGAAACAGGCTGTAGCTGATGAGTTGGAAGGACCTGCAGTGAATTCCGTTGCTAATTCTTTTATAAATATGGAGCTGAAAAATCCAGGATCTTGTGAAATTTTTATACGCAAGTTGCTTCAGCAATTGGGAAGTTCTAATGAAGCATCATTGAAGGATTTGCAAGCGCTAGCAGCTCATATTTTCTCCAAAGGCAAGTCAGTTTCTGAAGAAACAAATGTGAATGCAGATGCTGATAGCAGTAAAAAGCAACCAAACACAGAAACTAATTCAAATTCCAATTTGAGCCCTCTTGCTAGGTTTTTGCTCTCGAGATGGCAAGGACAAGTATCAAGGGATCTCAACGCAGCTTAG 2064 41.52 MAEAEIIVETTGSRFSSLELIGKGSFGDVYKGLDKDLNKEVAIKVIDLEEAEDEIEDIQKEISVLSQCRCPYITEYYGSHLHETKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILCDLLHAINYLHSEGKIHRDIKAANILLSEQGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSDGYDEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKEFVSLCLKKVPAERPSAKELLKHRFIKNAKKSPRLLERISERPKYLIKEDVEASKNGTRDMGEMSDTVKVSRNLKEESAQASNQGRTIKNAGWDFSIGASQSTGTIRSVKPPPIREKKFALSSGHAPPLRISDRGNPREDTFSRDARDSFITERLENNSDDEEFSGSGTVVIRSPRGFLSPTQYHHQSTTSENTYAPFKDTSSSGTVVFRSQHDDLGSPQTPRSRLGIQERTSSASLEEESAINLAEAKAAMQAGLRKPNVRERSGKISNKGKEDRKRELMTSSSDSSRHSHEYYDAPKALTRSQTSDDEEIAKVTASSPPLSILLIPSLKQAVADELEGPAVNSVANSFINMELKNPGSCEIFIRKLLQQLGSSNEASLKDLQALAAHIFSKGKSVSEETNVNADADSSKKQPNTETNSNSNLSPLARFLLSRWQGQVSRDLNAA 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 791788 796902 + Conep06aG0016200.1 Cone6ag0161 439045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0161 687 SMART serkin_6 15 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0161 687 Coils Coil 41 68 - -
Cone6ag0161 687 CDD STKc_MST3_like 13 287 - -
Cone6ag0161 687 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
Cone6ag0161 687 MobiDBLite consensus disorder prediction 424 480 - -
Cone6ag0161 687 MobiDBLite consensus disorder prediction 639 664 - -
Cone6ag0161 687 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0161 687 MobiDBLite consensus disorder prediction 494 550 - -
Cone6ag0161 687 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0161 687 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 13 647 IPR050629 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
Cone6ag0161 687 MobiDBLite consensus disorder prediction 360 409 - -
Cone6ag0161 687 Gene3D Transferase(Phosphotransferase) domain 1 12 306 - -
Cone6ag0161 687 MobiDBLite consensus disorder prediction 373 402 - -
Cone6ag0161 687 SUPERFAMILY Protein kinase-like (PK-like) 13 310 IPR011009 -
Cone6ag0161 687 MobiDBLite consensus disorder prediction 501 550 - -
Cone6ag0161 687 FunFam serine/threonine-protein kinase dst1 isoform X1 12 300 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0161 K08838 - - vvi:100258981 932.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0901 Cone-Chr13:7955235 Cone6ag0161 Cone-Chr6:791788 2.43E-78 dispersed
Cone19ag0899 Cone-Chr19:7013667 Cone6ag0161 Cone-Chr6:791788 1.29E-78 dispersed
Cone3ag0708 Cone-Chr3:3623830 Cone6ag0161 Cone-Chr6:791788 2.33E-28 dispersed
Cone6ag0161 Cone-Chr6:791788 Cone8ag0549 Cone-Chr8:4082559 2.72E-58 dispersed
Cone14ag1056 Cone-Chr14:8907549 Cone6ag0161 Cone-Chr6:791788 8.60E-299 wgd
Cone6ag0161 Cone-Chr6:791788 Cone9ag0187 Cone-Chr9:814399 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g189 . . . . . . . . . . Cma01g01216 Cma09g00851 Car01g01040 Car09g00765 . Cpe06g00678 Cpe02g00695 Bhi09g03449 . . . . Mch11g1051 . Cla11g01746 Cam11g1814 Cec11g1834 Cco11g1840 Clacu11g1974 Cmu11g1784 Cre11g2191 Cone6ag0161 Cone9ag0187 Cone14ag1056 . Lsi04g02056 Csa04g02327 Chy07g00059 Cme07g00580 . . . . . . . . . Cmo01g01271 Cmo09g00844 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone14ag1056 . 1 681 MAP Kinase Kinase Kinase Kinase AT1G53165 60.0 4.4e-211 731.9
Cone9ag0187 . 1 687 MAP Kinase Kinase Kinase Kinase AT1G53165 59.1 2.7e-208 722.6
Cone6ag0161 . 9 685 MAP Kinase Kinase Kinase Kinase AT1G53165 58.8 6.1e-205 711.4
Cone13ag0901 . 259 515 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 2.4e-68 257.7
Cone19ag0899 . 260 516 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 2.4e-68 257.7
Cone9ag0187 . 1 686 MAP Kinase Kinase Kinase Kinase AT3G15220 61.8 2.5e-222 769.2
Cone14ag1056 . 1 680 MAP Kinase Kinase Kinase Kinase AT3G15220 61.3 4.7e-221 765.0
Cone6ag0161 . 9 684 MAP Kinase Kinase Kinase Kinase AT3G15220 61.5 1.3e-218 756.9
Cone13ag0901 . 260 515 MAP Kinase Kinase Kinase Kinase AT3G15220 52.5 5.4e-68 256.5
Cone19ag0899 . 261 516 MAP Kinase Kinase Kinase Kinase AT3G15220 52.5 5.4e-68 256.5
Cone13ag0901 . 1 833 MAP Kinase Kinase Kinase Kinase AT1G69220 60.1 1.1e-248 857.1
Cone19ag0899 . 8 834 MAP Kinase Kinase Kinase Kinase AT1G69220 59.1 2.0e-247 852.8
Cone6ag0161 . 23 271 MAP Kinase Kinase Kinase Kinase AT1G69220 53.2 2.2e-68 258.1
Cone9ag0187 . 23 271 MAP Kinase Kinase Kinase Kinase AT1G69220 52.4 2.2e-68 258.1
Cone14ag1056 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 52.4 9.2e-67 252.7
Cone18ag1363 . 3 663 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 3.7e-247 851.7
Cone11ag0114 . 19 679 MAP Kinase Kinase Kinase Kinase AT5G14720 66.3 7.0e-246 847.4
Cone8ag0549 . 8 724 MAP Kinase Kinase Kinase Kinase AT4G24100 64.5 4.4e-246 848.2
Cone12ag0550 . 8 723 MAP Kinase Kinase Kinase Kinase AT4G24100 64.4 6.4e-245 844.3
Cone12ag0550 . 11 724 MAP Kinase Kinase Kinase Kinase AT4G10730 65.7 5.3e-249 857.8
Cone8ag0549 . 11 725 MAP Kinase Kinase Kinase Kinase AT4G10730 65.8 1.2e-248 856.7
Cone20ag1129 . 4 368 MAP Kinase Kinase Kinase Kinase AT1G70430 60.5 4.0e-128 456.1
Cone17ag0279 . 4 348 MAP Kinase Kinase Kinase Kinase AT1G70430 62.9 2.0e-127 453.8
Cone18ag0623 . 4 479 MAP Kinase Kinase Kinase Kinase AT1G70430 50.6 6.4e-126 448.7
Cone11ag0941 . 4 407 MAP Kinase Kinase Kinase Kinase AT1G70430 55.4 7.1e-125 445.3
Cone12ag0550 . 5 353 MAP Kinase Kinase Kinase Kinase AT1G70430 58.5 8.4e-118 421.8
Cone8ag0549 . 5 367 MAP Kinase Kinase Kinase Kinase AT1G70430 55.9 8.7e-115 411.8
Cone17ag0279 . 1 631 MAP Kinase Kinase Kinase Kinase AT1G79640 59.1 7.0e-206 714.5
Cone20ag1129 . 1 631 MAP Kinase Kinase Kinase Kinase AT1G79640 58.1 2.0e-205 713.0
Cone18ag0623 . 1 655 MAP Kinase Kinase Kinase Kinase AT1G79640 57.8 1.3e-204 710.3
Cone11ag0941 . 1 655 MAP Kinase Kinase Kinase Kinase AT1G79640 57.5 2.8e-199 692.6
Cone11ag0114 . 20 342 MAP Kinase Kinase Kinase Kinase AT1G23700 59.5 8.9e-102 368.2
Cone18ag1363 . 4 326 MAP Kinase Kinase Kinase Kinase AT1G23700 58.6 4.1e-99 359.4
Cone11ag0941 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.6 2.4e-86 317.0
Cone17ag0279 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.6 6.9e-86 315.5
Cone18ag0623 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.0 1.2e-85 314.7
Cone20ag1129 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.0 3.4e-85 313.2
Cone12ag0550 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.2 3.2e-75 280.0
Cone4ag0304 . 15 493 MAP Kinase Kinase Kinase Kinase AT4G14480 56.6 1.0e-137 487.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005838 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82906 None None None None Cone PK