Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0166 ATGGCTCCTAGAGATAGATCCGCCGCCGTTGCCGGATCTAACAACCCAAACCCGGTTCCAGCCTCTAAAGAGATCCGTTACAGAGGAGTGAGGAAGAGGCCGTGGGGCCGTTACGCCGCGGAGATCCGTGATCCTGGCAAGAAGACCCGCGTTTGGCTCGGTACATTTGACACGGCTGAGGATGCAGCGCGTGCTTACGATGCGGCGGCGCGTGAGTTCAGAGGCCCTAAGGCTAAGACTAACTTTCCCACCCCGTCAGAACTCATCGTCGTCAATAATCCGAAGAATACTAATAACAACTATTCGCCGCGTAGCAGTCCGAGCCAGAGCAGCACGGTTGATTCGTCTTCACCGCCGCCGGCTCCGACGCCGTTGGATCTTACTCTTAGCTCACCATCTGGACGCGCCGCCACCACCACCGGTTTTCCCGCTAGCTGCTTTCCTCATTACGGCGGAGTAACAACTCTTCCGATGACGCGTCCCGTTTTTTTCTTCGACGCTTTTGCACGCGCGGAGTTGAAGAATGCTAGTTTTCGAGAGATCTCTAGTTTCGATCGAGCGGTGGTTGGTGGTTTCAATAAGATCGCAGCCGGTGTGATGCAGAGCGACTCGGATTCATCATCCGTTCTTGATTTCGAAAGTGCCCATATTCAGAGACCCCTAGATCTCGACCTCAACTTCCCCCCACCGGAAGTTGCTTAA 702 54.84 MAPRDRSAAVAGSNNPNPVPASKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEDAARAYDAAAREFRGPKAKTNFPTPSELIVVNNPKNTNNNYSPRSSPSQSSTVDSSSPPPAPTPLDLTLSSPSGRAATTTGFPASCFPHYGGVTTLPMTRPVFFFDAFARAELKNASFREISSFDRAVVGGFNKIAAGVMQSDSDSSSVLDFESAHIQRPLDLDLNFPPPEVA 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 810460 811915 - Conep06aG0016700.1 Cone6ag0166 439050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0166 233 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0166 233 FunFam Ethylene-responsive transcription factor 2 26 84 - -
Cone6ag0166 233 MobiDBLite consensus disorder prediction 85 116 - -
Cone6ag0166 233 CDD AP2 26 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0166 233 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 201 - -
Cone6ag0166 233 MobiDBLite consensus disorder prediction 76 136 - -
Cone6ag0166 233 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0166 233 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0166 233 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0166 233 SMART rav1_2 26 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0166 233 MobiDBLite consensus disorder prediction 1 25 - -
Cone6ag0166 233 Pfam AP2 domain 26 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0166 233 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0166 Cone-Chr6:810460 Cone8ag1554 Cone-Chr8:11648898 3.17E-33 dispersed
Cone1ag0177 Cone-Chr1:1000884 Cone6ag0166 Cone-Chr6:810460 1.11E-44 wgd
Cone12ag1475 Cone-Chr12:10549137 Cone6ag0166 Cone-Chr6:810460 1.09E-41 wgd
Cone3ag1463 Cone-Chr3:33278845 Cone6ag0166 Cone-Chr6:810460 1.38E-31 wgd
Cone6ag0166 Cone-Chr6:810460 Cone6ag0997 Cone-Chr6:5491872 7.13E-43 wgd
Cone6ag0166 Cone-Chr6:810460 Cone8ag1521 Cone-Chr8:11472003 4.77E-38 wgd
Cone6ag0166 Cone-Chr6:810460 Cone9ag0191 Cone-Chr9:828398 2.78E-127 wgd
Cone6ag0166 Cone-Chr6:810460 Cone9ag0999 Cone-Chr9:5159303 2.86E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46262 PF00400 WD40 0.00078 CL0186 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0166 K09286 - mtr:25487302 182.185