Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0170 ATGGAAAATGGAAACGGGAATAAGGAAGCAGATACAACAGCAGCATCGCCGTCAACAATCACGATTAAAGGCATTCTGAGTCTGATAATGCAAGAGATCGATGAAAAGGATAGGAGGAGGGTGATTTCTCTTGGCATAGGCGACCCTTCTGCTTATTCTTGCTTCCACACTGCACACGTTGCAGAAGAAGCTGTTCTTGATGCTCTTCAAGCTCGGACCTTCAATGGCTATGCTCCCACTGTTGGCCTTCCTCAAACAAGAAGTGCTATTGCAAAATATCTATCCCGAGATCTTCCATACAAATTGACATCGGACGATGTTTTCATCACATCCGGCTGCACACAAGCAATAGACATTGCTTTGACGATGCTAGCTCCACCCGGTGCAAATATCTTGCTTCCAAGGCCAGGCTTTCCTATCTATGAACTATGTGCCGGGTTTAGAAATCTTGAAGTCCGGTACGTAGATTTGCTTCCACAGAACGGTTGGGAAGTAGATCTTCAAGCGGTTGAGGCTCTTGCTGATCAAAACACTGTCGCATTAGTTATCATAAATCCCGGAAACCCTTGCGGGAATGTATATAGTTACCAGCATTTGAAAAAGATTGCAGAAACGGCAAGAGAGCTTAGGATTCTGGTGATTGCTGATGAGGTTTATGGGCATCTTGTTTTTGGGGGGAAACCATTTGTGCCGATGGGAGTTTTCGGATCGATTGTTCCTGTTCTTACACTTGGATCTTTATCGAAGAGATGGATTGTTCCTGGATGGAGACTTGGGTGGTTTGTGACAAGCGATCCTTGCGGCATGTTTAGAAAACCCAAGATGATCGAGCGTATGAAGAAGTATTTTGATACTCTAGGGGGCCCTGCAACCTTCATTCAGGCAGCTGTTCCTCGCATACTAGAGGAAACTGACGAGGGTTTCTTCAAGGAAACTATAAGCATACTTAAGCAGACCACGGAAATTTGTTGCAACAAGATAGACGAGATTCCGTGCATTACATGTCCGTATAAACCAGAAGGGTCTATGGCAGTAATGGTGAAACTGAATCTTGAAGTACTAGAAGATATTAGTAATGATATCGACTTCTGTTTTAAGCTCGCCAAAGAGGAATCTGTGATCGTTCTTCCTGGAACGGCAGTGGGGCTAAGGAATTGGCTCCGGATTGTTTTCGCCATTGATCCACCCTCTCTAGAAGAAGCTTTGGAGAGGATAAAATCTTTCAACAAACGGCACGCCCGGAAATTAGGAAGATAA 1257 44.55 MENGNGNKEADTTAASPSTITIKGILSLIMQEIDEKDRRRVISLGIGDPSAYSCFHTAHVAEEAVLDALQARTFNGYAPTVGLPQTRSAIAKYLSRDLPYKLTSDDVFITSGCTQAIDIALTMLAPPGANILLPRPGFPIYELCAGFRNLEVRYVDLLPQNGWEVDLQAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIAETARELRILVIADEVYGHLVFGGKPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTSDPCGMFRKPKMIERMKKYFDTLGGPATFIQAAVPRILEETDEGFFKETISILKQTTEICCNKIDEIPCITCPYKPEGSMAVMVKLNLEVLEDISNDIDFCFKLAKEESVIVLPGTAVGLRNWLRIVFAIDPPSLEEALERIKSFNKRHARKLGR 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 826133 828279 + Conep06aG0017100.1 Cone6ag0170 439054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0170 418 FunFam tyrosine aminotransferase 60 305 - -
Cone6ag0170 418 Gene3D - 60 305 IPR015421 -
Cone6ag0170 418 Pfam Aminotransferase class I and II 40 405 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
Cone6ag0170 418 PIRSF Tyr_transaminase 2 417 IPR005958 GO:0006520(InterPro)|GO:0008483(InterPro)|GO:0030170(InterPro)
Cone6ag0170 418 PANTHER TYROSINE AMINOTRANSFERASE 9 413 - GO:0004838(PANTHER)|GO:0006572(PANTHER)
Cone6ag0170 418 FunFam Tyrosine aminotransferase 288 409 - -
Cone6ag0170 418 Gene3D Aspartate Aminotransferase, domain 1 43 408 IPR015422 -
Cone6ag0170 418 SUPERFAMILY PLP-dependent transferases 31 410 IPR015424 -
Cone6ag0170 418 CDD AAT_like 42 406 - -
Cone6ag0170 418 NCBIfam tyrosine/nicotianamine family aminotransferase 16 413 IPR005958 GO:0006520(InterPro)|GO:0008483(InterPro)|GO:0030170(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0170 K00815 - - csv:101212407 666.381
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1361 Cone-Chr10:10604143 Cone6ag0170 Cone-Chr6:826133 7.08E-180 dispersed
Cone15ag1043 Cone-Chr15:8649709 Cone6ag0170 Cone-Chr6:826133 8.75E-229 dispersed
Cone15ag1044 Cone-Chr15:8663399 Cone6ag0170 Cone-Chr6:826133 4.10E-233 dispersed
Cone20ag1367 Cone-Chr20:8758701 Cone6ag0170 Cone-Chr6:826133 3.89E-16 dispersed
Cone4ag0891 Cone-Chr4:6447986 Cone6ag0170 Cone-Chr6:826133 5.29E-12 dispersed
Cone14ag1051 Cone-Chr14:8854354 Cone6ag0170 Cone-Chr6:826133 1.24E-235 wgd
Cone15ag1041 Cone-Chr15:8625680 Cone6ag0170 Cone-Chr6:826133 3.69E-176 wgd
Cone6ag0170 Cone-Chr6:826133 Cone9ag0196 Cone-Chr9:842530 2.46E-260 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g179 . . Bda07g00312 . . . . . . . Cma01g01229 . Car01g01050 Car09g00755 Sed04g2424 Cpe06g00670 Cpe02g00687 Bhi09g03464 Tan01g4364 Cmetu07g0974 . Hepe01g1410 Mch11g1040 . Cla11g01734 Cam11g1804 Cec11g1824 Cco11g1830 Clacu11g1963 Cmu11g1773 Cre11g2180 Cone6ag0170 Cone9ag0196 Cone14ag1052 Cone15ag1044 Lsi04g02044 Csa04g02316 . Cme07g00569 . . . . . . . Bma14g00251 . Cmo01g01282 Cmo09g00835 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000682 2 4 1 1 1 2 3 3 2 2 2 3 4 2 2 5 3 10 3 3 2 6 3 5 4 3 4 4 2 5 96