Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0176 ATGGAAGCAGAGGCGACGACGACGACGAAGAAGAAGAAGACTAGTAAACCTCTCCAGTTCAACCCCAACTGGGCTATGCTCCAGCAGAAGCTGAAAAGCCATGGCTCGATGCCTTCAAGGACCTCAAATCCCTCAGAAATCGAGACCCATAATTCCGTTTTAGGGAAGCGTAAGGATAGACCGGATGCAGGGTCAAATGTTCCGAAGAAAAATCCTCTCATTCCAGTCAATAATGACTCCAGCCTTACAGATGCAGTAGCTATGGATTGTGAAATGGTTGGTGTTGGTCAAGGAAACAAGAGCGCCCTTGGACGAGTCACTCTGGTAAATAAATGGGGAAATGTTGTATATGATGAGTTTGTTCGCCCATTAGAGCATGTCATTGATTTCCGTACTCAAATTAGTGGCATAAGACCCCGTGATTTGAAGAAAGCCAAGGATTTCCGAACCGCACAAAAGAAAGTTGCAGAGTTGATTAAAGGAAAGATTCTTGTTGGACATGCATTGCGCAACGATCTTAAGGCATTGCTATTAAGTCATCCGAAGGAGGACATACGTGACACCTCGGAATACTCTCTCTTTCAGAAGGAAGGGGGTAGAAGGGCACTACGGCATTTAGCTTCCGAGTTTCTTGGCGTTGAGATCCAAAATGGGGAGCATTGTCCTATTGAAGATGCTAGAGCAGCCATGGTGCTATATCAGAGAAACAGAAAACGATGGGAAAAGAGTGTGAAAGATGAGATAAAGCTCAAGCAAAAGAAGAAGAAACACAAACCCAGGAAGAAACTAATCAAGGATGGAGGAGAGGCTCCTCCTCTCTTTTGA 825 44.97 MEAEATTTTKKKKTSKPLQFNPNWAMLQQKLKSHGSMPSRTSNPSEIETHNSVLGKRKDRPDAGSNVPKKNPLIPVNNDSSLTDAVAMDCEMVGVGQGNKSALGRVTLVNKWGNVVYDEFVRPLEHVIDFRTQISGIRPRDLKKAKDFRTAQKKVAELIKGKILVGHALRNDLKALLLSHPKEDIRDTSEYSLFQKEGGRRALRHLASEFLGVEIQNGEHCPIEDARAAMVLYQRNRKRWEKSVKDEIKLKQKKKKHKPRKKLIKDGGEAPPLF 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 844427 847022 - Conep06aG0017700.1 Cone6ag0176 439060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0176 274 Coils Coil 223 243 - -
Cone6ag0176 274 SMART exoiiiendus 84 242 IPR013520 -
Cone6ag0176 274 MobiDBLite consensus disorder prediction 51 65 - -
Cone6ag0176 274 MobiDBLite consensus disorder prediction 12 50 - -
Cone6ag0176 274 MobiDBLite consensus disorder prediction 244 274 - -
Cone6ag0176 274 CDD REX4_like 86 234 IPR037431 GO:0006364(InterPro)|GO:0008408(InterPro)
Cone6ag0176 274 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 9 247 IPR047021 GO:0004527(InterPro)|GO:0004527(PANTHER)|GO:0005634(PANTHER)
Cone6ag0176 274 SUPERFAMILY Ribonuclease H-like 85 234 IPR012337 -
Cone6ag0176 274 MobiDBLite consensus disorder prediction 1 78 - -
Cone6ag0176 274 FunFam Interferon-stimulated exonuclease gene 20 81 252 - -
Cone6ag0176 274 Gene3D - 81 260 IPR036397 GO:0003676(InterPro)
Cone6ag0176 274 Pfam Exonuclease 86 232 IPR013520 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0176 K18327 - - csv:101211187 369.392
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0176 Cone-Chr6:844427 Cone9ag0201 Cone-Chr9:860341 1.15E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g155 . . . . . . . . . . . Cma09g00835 . Car09g00750 . Cpe06g00666 . Bhi09g03475 . . . . Mch11g1035 . Cla11g01730 . . . . . . Cone6ag0176 Cone9ag0201 . . Lsi04g02039 . . Cme07g00559 . . . . Bpe11g00451 . . . . . Cmo09g00830 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013924 1 3 0 1 1 0 1 0 0 0 1 0 1 1 1 1 0 2 1 0 0 1 1 1 1 1 1 1 1 1 24