Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0180 ATGGATGAATACATAGATGAACTTGTCAATTGGTTTATTCTCAGAATTCTAGCAAATCGGCAATCGGCACAAAAGTCACGAGTGAGAAAACTACGATACATTTCAGAACTCGAGCGGAGCGTTACGATGTTACAATGCGAGGTATTGGCATTGTCATCAAGAGTTGCATTTCTAGACCACCAAAGTTTGATGCTTAGCGTCGACAATAGTGCTATAAAGCAACGGATTGCGGCTTTGGCTCAAGACAAGATCTTCAAAGATGGTAATGTTACAATAACTAATCTTTGA 288 39.58 MDEYIDELVNWFILRILANRQSAQKSRVRKLRYISELERSVTMLQCEVLALSSRVAFLDHQSLMLSVDNSAIKQRIAALAQDKIFKDGNVTITNL 95
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 856491 856885 + Conep06aG0018100.1 Cone6ag0180 439064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0180 95 FunFam Transcription factor VIP1 12 81 - -
Cone6ag0180 95 Pfam bZIP transcription factor 15 61 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0180 95 CDD bZIP_plant_RF2 15 61 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0180 95 SMART brlzneu 3 71 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0180 95 SUPERFAMILY Leucine zipper domain 15 63 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0180 95 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 15 29 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0180 95 Gene3D - 13 82 - -
Cone6ag0180 95 PANTHER BASIC LEUCINE ZIPPER 34 15 89 IPR052483 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0180 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0180 Cone-Chr6:856491 Cone8ag1416 Cone-Chr8:11073062 4.52E-18 dispersed
Cone14ag1040 Cone-Chr14:8779291 Cone6ag0180 Cone-Chr6:856491 7.98E-17 wgd
Cone15ag1029 Cone-Chr15:8550755 Cone6ag0180 Cone-Chr6:856491 4.00E-19 wgd
Cone6ag0180 Cone-Chr6:856491 Cone9ag0205 Cone-Chr9:871968 1.86E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g147 . . . . . . . . . . Cma01g01233 Cma09g00832 Car01g01054 Car09g00746 Sed05g2538 Cpe06g00663 Cpe02g00683 Bhi09g03480 Tan01g4352 Cmetu04g0980 . Hepe01g1419 Mch11g1032 . Cla11g01727 Cam11g1797 Cec11g1818 Cco11g1824 Clacu11g1956 Cmu11g1766 Cre11g2174 Cone6ag0180 Cone9ag0205 Cone14ag1040 Cone15ag1029 Lsi04g02035 Csa04g02307 Chy07g00043 Cme07g00555 . . . . . . . . . Cmo01g01286 Cmo09g00825 . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46264 PF04515 Choline_transpo 5.90E-81 No_clan Cone TF