Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0186 ATGGCTTGTTTCTCTTTCTGTTGTAGTAGAGTTGAAGCTTCCTCAGCCAATAATCTACCACTCCGAATCGATGATGATGTTTCGAGCATCCAGAATGTTCGGTTATTCTCTTACAAGGAACTGCAAACTGCCACTCAGAACTTCAGTCCGGCAAATAAAATCGGGCAGGGTGGTTTCGGTTCTGTCTACAAGGGACTGCTCAGGGATGGAAATGTAGTTGCGGTAAAGGTATTATCGGCTGACTCAAGGCAAGGTGTTAAGGAATTCTTGACCGAAATTAACATCATCACAGATATAGAGCATGAAAATCTGGTTGAATTATATGGTTGCTGTGTGGATAAGAATCAAAGGATTTTAGTCTATGGGTATTTAGAGAACAACAGCCTTTCGGAAACACTTCTTGGTGGAAGTCATAGTTCACTCCAATTTAGTTGGCGTACAAGGGATAAAATATGCATAGGAGTTGCTCGTGGACTTGCATTCCTTCATGGGGAAGTCCGGCCTCATATTATCCATAGGGACATCAAAGCAAGCAATATTTTACTCGATAAAGACTTCACGCCTAAAATCTCGGATTTTGGCCTTGCAAAGCTCATCCCGGCTCATTTGACCCATCTTAGCACACGGGTTGCTGGAACAGCAGGTTATTTGGCGCCTGAATATGCTGTACGAGGTCAAGTGACTAGAAAATCAGATGTCTACAGTTTTGGTGTTCTGTTACTGGAAATCGTTAGTGGCAGGTGCAATATAAACCGGCGTTTGCCAGCTGGACAACAACACCTCCTTGAACGGGCATGGGATCATTACGAGCGGGGGGAGTTGGTGGAATTGGTCGACTCGTTGTTAGGTGAAGATTTCAATGCAGAGGAAGCTTCAAGATTTCTAAAAGTTGGTCTTCTCTGCACGCAAGACATGCTGAATCTACGGCCTTCTATGTCAAATGTGGTTAAGATGCTGGTGGGTGAAATTCATGTGGATGATGAGAAAATATCGAAACCTGGATTACTTGCGGATTTTATGGCATATAAAGATGAGTTTGGAAAGAAGACAGAGGGCAAGGTGAGAGCCAATTCCACTACCGAAGCTGACTCGGGGAAGCAGACAAGCTCATCTTTTTCGTTGGAAAATGCTACTACATCTTATGTTCTGAGTTCTTCAGCTTATTAG 1167 43.53 MACFSFCCSRVEASSANNLPLRIDDDVSSIQNVRLFSYKELQTATQNFSPANKIGQGGFGSVYKGLLRDGNVVAVKVLSADSRQGVKEFLTEINIITDIEHENLVELYGCCVDKNQRILVYGYLENNSLSETLLGGSHSSLQFSWRTRDKICIGVARGLAFLHGEVRPHIIHRDIKASNILLDKDFTPKISDFGLAKLIPAHLTHLSTRVAGTAGYLAPEYAVRGQVTRKSDVYSFGVLLLEIVSGRCNINRRLPAGQQHLLERAWDHYERGELVELVDSLLGEDFNAEEASRFLKVGLLCTQDMLNLRPSMSNVVKMLVGEIHVDDEKISKPGLLADFMAYKDEFGKKTEGKVRANSTTEADSGKQTSSSFSLENATTSYVLSSSAY 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 887390 890301 - Conep06aG0018800.1 Cone6ag0186 439070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0186 388 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 356 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cone6ag0186 388 MobiDBLite consensus disorder prediction 350 371 - -
Cone6ag0186 388 SMART serkin_6 48 295 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0186 388 CDD STKc_IRAK 54 319 - -
Cone6ag0186 388 SUPERFAMILY Protein kinase-like (PK-like) 27 319 IPR011009 -
Cone6ag0186 388 MobiDBLite consensus disorder prediction 357 371 - -
Cone6ag0186 388 FunFam cold-responsive protein kinase 1 124 335 - -
Cone6ag0186 388 Pfam Protein kinase domain 51 251 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0186 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag0186 388 FunFam cold-responsive protein kinase 1 20 123 - -
Cone6ag0186 388 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524(InterPro)
Cone6ag0186 388 ProSiteProfiles Protein kinase domain profile. 48 306 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0186 388 Gene3D Transferase(Phosphotransferase) domain 1 124 332 - -
Cone6ag0186 388 Gene3D Phosphorylase Kinase; domain 1 21 123 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1268 Cone-Chr13:9584144 Cone6ag0186 Cone-Chr6:887390 5.20E-126 dispersed
Cone5ag0334 Cone-Chr5:1416258 Cone6ag0186 Cone-Chr6:887390 2.17E-126 dispersed
Cone6ag0186 Cone-Chr6:887390 Cone6ag1029 Cone-Chr6:5801684 8.45E-121 dispersed
Cone6ag0186 Cone-Chr6:887390 Cone9ag0212 Cone-Chr9:902408 2.91E-235 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82907 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0186 - - - 0.0