Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0187 ATGTTAAGAAGCAAAGAAATTTCAGATATGCAGGATGATGTCTTTGAGGGGTCTGAAGAAGAGCTTCACATATTTAGGGAGGTTTTCTTTGGTACTGAATCTGTTCATTTTAGTCAGACATGTAGTGTTGCTGGAGTGACTGGTTTTGAACGTGATTCCAGTAAGAATGCAGATACTTCGCTCTGTTCAAATACTGAAAACTCAATTGTTACAAGTATTTCATCCTCAAAAAGTTTAGATCTTGACGAAGGTTTTAATGTAACTGAGAATGTTAGAGAAATTACAGCCCCAGGTTGTTCCTTAAGTGGTTCTACTGCAGCGGACAAAAATCATGAGAATGTGAATGCTAAGCGAATGAAATTTTCTATTGATGAGCTCTCAAACACCAACCTGGATTTGGGTAAGGTTATTAACTCATCTGCAGTTACAAAAGAAATTTATCCTGGCAGGTATCGTCATGTTAAGGACTCTGGTTGTGAAACAGTGTCCTTTCAGATTGTGGAATCATCTAGTAAGGGTGTTACATCCAGCCGCTATCTGTTTAGGCATTCTGAGAGACATGGGGGCACGGAGGACCGCAATATTCTAAAATGCAAAGTACAGAGTTTAGATGGTAACAGTGGAAATGAGGTGGTTGCTAGCAAAGCTATTGCGTCACCGGTTTCCCAAGAAAGCTTTGTGACCAGGCTATTGGTTACAAGTCCAAATGGTGCTTTTACTGACAAGTCTGGCTCTCCTTCTGTCGCAGAGGAAATACAAGATCGATTTGAATCCCAAGGATTTGATATGTCCAACTTTTCTCTGAAGACAGATTTTACTAGGGATCCCCGCCATCTTCTCCACTACCATGCTATTCATGTACTTATGTCAGCTGGATGGTCTATTGACCGGCGCAAAAGACCTAGCAGGCGTTCCATGGAGTCGGTGTATAGGTCGCCCCAGGGAAGGCCTGTTCGTGAATTCACCAAGGTTTGGAGGTTATGCGGCGAGGTTTTGTTTGCTGATAGATGTAATTTGGTGAAGGAAGATGATGCTAAGGAATGGACTGGTATCAGTCAATTCTGGTCCGATCTTTCTGATACATTGATGAAAATTGAGAAAGAAATTAATCATTCAGGAATTAATTCCTTGGCTCATAGATGGAGTGCTTTAGATCTTTTTGTGGTAGTTGTCTTCATCGATAGGAAGATTGGTTCGCTTAGAAAGGGAGATGTTGTTAGGGCAACTGGAAGCTTAGTGGTTAATCAAAGCAAGAAGCCTGAAACTGATTTGACTTTACCAAATGAAGATACCATTGGACGCCTGTTTTCTCCGAGACATGTGTCAGCTCCACCTTCCGATTCTTTTCTGGCTACCAAATGTGTTTCAAAAGGGATAGCCTCTAATGTTATTGGAGTGAGCCAGAGTTCACCTGATGACAAAGCTTGTGATGTCAATTTCTCAGATCATGGCGAGCATATTGAAGGAGTGAAAGTGCAGACAGGTGTGTCTATATATGTGGCCAAATTAGGAGAAGCTACTAATGTGATGGGGAGTCAGTTCAGTGGAAGCTCTAAGACTGACAAAGGCAATGGAGATATAACTTCATTACCTTCTTGTGGATCAAATAGCACTTGCATTCAGTTTGGCGGTTGTACATATGATGTTCCTGTTGCTTCTGAAAACTATGATGATACACTCACTTTGAAATCAACATGCCCTGATAACTTTGAAAAATCTATAATAACTCCAGAAGACGTATCAACTGATGTTTTGGCGGAAAAAGATGAACAAAACGAAGTTCAAGTGTCTCAAAAAATGGGTGGGCTGTGCTTTAGTACTTCTAAGCACGAAACTGAGGACGTATGTTCTACAGCAGATCTGGCCCTGAAGAAGAAGACACGGAGGAAGTCTAAAAAGATATCTGAAATCAAACCAATCACATCTCTGCTGTCTGACGATTTCTGTTCAACATCAGGCAAGAGCATGGAGTTGCAGGATATTGATGCCAATGGCTCTCAGATCAACTTAATAGAAAACCAGGATTACCACATAGCCTACTCCAGAAACAACAATGATTGCCCTTCTTCCCAGTACTTAAATAAGAGAGAAGGCTTGAAGTTAAAGAAAGTTTGTAACGTTTCTAATGACTATAAACCTGGAAGAAAGAAATTGAGGGAATGTCAAATTGAAGATGATGACCTATTGGTTTCAGCCATAATTAAAAACAAGGATTTCAGCTCAATGACTATGAGACTTATCTCTAAGACAAAGAGGTGTAAATCTAGAGTTAGAGGAAGGCCAAAAGGTCAAAAGATTGGCTGTAGGTTGCGTTTAAGAAGCCTGGGAAATGGGGAAAAACATTATAAAGATGGAAAGTGGCATGCTATGGGAGCTAAAACAGTGATGTCTTGGCTAATAGATGCTGGAGCTATTTCACTGAGTGATAGCATTCAATATCGGAACCCTAAAGATGATAGTGTACTTAAAGAAGGTCGGATCACCAGGGATGGAATTATCTGTACTTGCTGCAGTAAGGTGTTTACCGTATCTGAGTTCAAAATTCATGCTGGGTTTAGGCTAAATCGGCCTTGCTTAAATCTTTTCATGGAATCTGGTAAGCCTTTTACTTTATGCCAGCTTCAAGCCTGGTCAGCTGAGTACAAGGCAAGGAAAAATGCAATCCAAGAAAGACAAACTGATGATGATGATCCAAATGATGATTCATGTGGTGTGTGTGGTGATGGAGGTGAGTTACTATGCTGTGATAACTGCCCTTCTGCTTTTCACCAGGCTTGTTTATCCACTCAGGAGCTCCCAGAAGGCAACTGGTATTGCCCAAACTGCACCTGCTGGATATGTGGGGATTTGGTTATTGATAAAGTGCCTTCAAGTGACTTTGATGCATTAAGATGTTGCCAGTGCGAACATAAGTATCATAAGCCATGCCTGGGTAATAATGATATGCAGGTCGAAGCTGGATCAGAGACTTCATTTTGTAGTGGGGGCTGTCAGGAGATATACTCAGGTCTTCAGTCACGCGTTGGACTTATAAATCAAGTAGCTGATGGGTTTTCATGGATGCTTCTTAGATGTATTCATGATGACCAAAAGCTTCATTCTGCCCAAAGGTTTGCCCTCAAGGCAGAATGCAATTCCAGATTAGCTGTTGCTCTCACTATCATGGAGGAATGCTTTGTTTCCATGGTGGATGCCAGAACAGGGATCGATATGATACCCCATGTTCTATATGGCTGGGGGTCAGATTTTGTGCGACTAAACTTCCATGGCTTTTACACAATGATACTAGAGAAAGATGACGTGGTAATATCCGTAGCATCGATCAGAATACATGGAACAACAGTTGCTGAGATGCCTCTTGTTGCAACTTGCAGTACTCATCGTCGCCGAGGAATGTGCCGACGCCTATTGACTGCTGTTGAAGAGATACTATTGTCATTAAAAGTCAAAAAGCTAGTCATAGCTGCAATTCCAACTCTAGTTGAGACTTGGACGGAAGGTTTTGGTTTCAAGCCTGTGGAAGATGACGAAAAGCAAAGCCTCAATAAGATCAACTTGATGGTATTTCCCGGTACCATACTACTCAAGAAACACTTATATAGAAGTCAAAAGCCAGGGAGAACTATTGATAAAGAATGCTTGGAAATGGATGAATCAACCAAACCCATAATTCGTTACGAGGTACTTCCAGTTTCTGAATCCACTGGCGAATTCATAATGGAAAATGAAGATTCGAAATGCGGGGAATTGCAAGAACTGGAAAGTCACAATAGAAAGGAAAACTCCAAGGTTGATCCAGGACAAGTCAATTCATCTCCTTCAAGGGCAGATGGATCAGATGAAATATGTATTTGTTCAGGGAAAGAGTCCACTCAATCTGTACATAAATCTGATGCGAACCCTTGTACTAATGAAAAAGTCGAAACAGAAAATCAGACCATGAAGTAG 3948 41.16 MLRSKEISDMQDDVFEGSEEELHIFREVFFGTESVHFSQTCSVAGVTGFERDSSKNADTSLCSNTENSIVTSISSSKSLDLDEGFNVTENVREITAPGCSLSGSTAADKNHENVNAKRMKFSIDELSNTNLDLGKVINSSAVTKEIYPGRYRHVKDSGCETVSFQIVESSSKGVTSSRYLFRHSERHGGTEDRNILKCKVQSLDGNSGNEVVASKAIASPVSQESFVTRLLVTSPNGAFTDKSGSPSVAEEIQDRFESQGFDMSNFSLKTDFTRDPRHLLHYHAIHVLMSAGWSIDRRKRPSRRSMESVYRSPQGRPVREFTKVWRLCGEVLFADRCNLVKEDDAKEWTGISQFWSDLSDTLMKIEKEINHSGINSLAHRWSALDLFVVVVFIDRKIGSLRKGDVVRATGSLVVNQSKKPETDLTLPNEDTIGRLFSPRHVSAPPSDSFLATKCVSKGIASNVIGVSQSSPDDKACDVNFSDHGEHIEGVKVQTGVSIYVAKLGEATNVMGSQFSGSSKTDKGNGDITSLPSCGSNSTCIQFGGCTYDVPVASENYDDTLTLKSTCPDNFEKSIITPEDVSTDVLAEKDEQNEVQVSQKMGGLCFSTSKHETEDVCSTADLALKKKTRRKSKKISEIKPITSLLSDDFCSTSGKSMELQDIDANGSQINLIENQDYHIAYSRNNNDCPSSQYLNKREGLKLKKVCNVSNDYKPGRKKLRECQIEDDDLLVSAIIKNKDFSSMTMRLISKTKRCKSRVRGRPKGQKIGCRLRLRSLGNGEKHYKDGKWHAMGAKTVMSWLIDAGAISLSDSIQYRNPKDDSVLKEGRITRDGIICTCCSKVFTVSEFKIHAGFRLNRPCLNLFMESGKPFTLCQLQAWSAEYKARKNAIQERQTDDDDPNDDSCGVCGDGGELLCCDNCPSAFHQACLSTQELPEGNWYCPNCTCWICGDLVIDKVPSSDFDALRCCQCEHKYHKPCLGNNDMQVEAGSETSFCSGGCQEIYSGLQSRVGLINQVADGFSWMLLRCIHDDQKLHSAQRFALKAECNSRLAVALTIMEECFVSMVDARTGIDMIPHVLYGWGSDFVRLNFHGFYTMILEKDDVVISVASIRIHGTTVAEMPLVATCSTHRRRGMCRRLLTAVEEILLSLKVKKLVIAAIPTLVETWTEGFGFKPVEDDEKQSLNKINLMVFPGTILLKKHLYRSQKPGRTIDKECLEMDESTKPIIRYEVLPVSESTGEFIMENEDSKCGELQELESHNRKENSKVDPGQVNSSPSRADGSDEICICSGKESTQSVHKSDANPCTNEKVETENQTMK 1315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 892098 899255 + Conep06aG0018900.1 Cone6ag0187 439071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0187 1315 Pfam Tify domain binding domain 825 875 IPR032308 -
Cone6ag0187 1315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 887 958 IPR013083 -
Cone6ag0187 1315 Gene3D - 1074 1188 - -
Cone6ag0187 1315 PANTHER PHD FINGER FAMILY PROTEIN 110 1306 - -
Cone6ag0187 1315 Pfam Acetyltransferase (GNAT) family 1088 1154 IPR000182 GO:0016747(InterPro)
Cone6ag0187 1315 SMART PHD_3 902 943 IPR001965 -
Cone6ag0187 1315 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1076 1176 IPR016181 -
Cone6ag0187 1315 MobiDBLite consensus disorder prediction 1285 1315 - -
Cone6ag0187 1315 Pfam PHD-finger 903 942 IPR019787 -
Cone6ag0187 1315 MobiDBLite consensus disorder prediction 1255 1315 - -
Cone6ag0187 1315 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1050 1200 IPR000182 GO:0016747(InterPro)
Cone6ag0187 1315 CDD PHD2_CHD_II 902 942 - -
Cone6ag0187 1315 SUPERFAMILY FYVE/PHD zinc finger 885 943 IPR011011 -
Cone6ag0187 1315 ProSiteProfiles Zinc finger PHD-type profile. 900 945 IPR019787 -
Cone6ag0187 1315 CDD NAT_SF 1095 1154 - -
Cone6ag0187 1315 FunFam Increased DNA methylation 1 893 945 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0187 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0851 Cone-Chr14:5399179 Cone6ag0187 Cone-Chr6:892098 5.71E-119 dispersed
Cone17ag0558 Cone-Chr17:2831597 Cone6ag0187 Cone-Chr6:892098 6.36E-119 dispersed
Cone20ag0858 Cone-Chr20:6259379 Cone6ag0187 Cone-Chr6:892098 2.87E-115 dispersed
Cone4ag1614 Cone-Chr4:12270950 Cone6ag0187 Cone-Chr6:892098 3.69E-88 dispersed
Cone6ag0187 Cone-Chr6:892098 Cone7ag1336 Cone-Chr7:9738098 8.08E-23 dispersed
Cone6ag0187 Cone-Chr6:892098 Cone9ag0213 Cone-Chr9:906213 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g125 . . . . . . . . . . Cma01g01243 Cma09g00813 Car01g01063 Car09g00728 . . Cpe02g00675 Bhi09g03500 . . . . . . Cla11g01718 Cam11g1787 Cec11g1808 Cco11g1813 Clacu11g1946 Cmu11g1757 Cre11g2165 Cone6ag0187 Cone9ag0213 . . Lsi04g02022 Csa04g02295 Chy07g00033 Cme07g00544 . . . . . Bpe01g00461 . . . Cmo01g01297 Cmo09g00807 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004598 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 1 2 2 1 1 1 1 2 1 1 1 3 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46266 None None None None Cone TR