Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0188 ATGTCTCATTCGGGCAATCCTAATAATGCAGAGCAGAGTTTTGACAGTCTAACAGATCGATTCCGTGACTCACTGAGTTGCGGAGCCGACAAGCCGGATTTCAGGGAACTAGATCTGGGTTCGCCCGTTTCGCCATTGCGGACTCGCCAAAGTGGAGGTGGGCCTGCTATCAGTAGTAGTTCAAGCTCCTCCGGATCAGTCTCGGGTAACCCGGCACCTAAGAGATCCGATTCCGGTCCGAACAATCACTCAGGTGAACTATCCGGTTCCAGCGAGAGCAGTCCCACAGCTGCAGAGAGTCTCCGATCCGATGGAATACCACGTAATTTCAAGCCGGGACATACCAGATCCAATTCCGGTTCAAATAATCCATTCATCTACTCGAGTCAGAGCTCCGTCACTTCTCCACCTACTTCTCCCAATGTGCTTCCCTCCGGCAATATCTGCCCATCTGGAAAGATTCTCAAAACGGGCATGGCATCAAATCGAAGCACCAGAACAGAGGTTTTGGGCTCCGGGTCGGGTCATTACGGGCATGGAAGCATAATTCGGGGTGGAGCTGCAAGAAGCACTGTGCCTGAGGTATCTCACATGGCAAATGCAAGGACAACCACAAGTCGAGGGGGCAGTAGTGGTGGTGTTGGCAGCAGCAGTGGCGGAGGTGGAGATTTGCTGAAGAGAGGAATAGTGAGTATGGATCCAGAGGATGTGAAGAGGGCAGGGAATGAGACTTACAAAAGGGGTCATTTTGCGGAGGCTTTGAGCCTCTATGATAGAGCCATTTCTCTTTCTCCGACCAATGCAGCCTATCGGGCAAACCGCGCGGCTGCATTAACCGGTCTTGGGCGACTCCATGAGGCTGTGGCGGAGTGCGAAGAGGCAGTTAGGTTGGATCCTAATTATGGGAGGGCTCACCACCGTTTGGCTACTCTTTTTGTTAGGTTAGGGCAGGTTGACAATGCCCGGAGGCACCTCTTTATCATTCCTGGGCTGCAGCCAGATCCATTAGAGTTACAGAAACTGCAGTTTGTAGAAAAGTGTCTAAGAAAATGTGGGGATGCCCGCAAGATGGGAAATTGGAAAAGTGCTTTGAGGGAGGTTGATTCTGCAATTGCTTCCGGCTCTGATTCTTCTCCCCAGCTCTTAATGTGTAGAGTGGAAGCACTTTTAAAACTCCATCAAATCGAAGATGCTGAATCCACGTTATCAAACATCCCCAAATTCGAACCGTCCCCAAGTTCCTCACAAGCTCGGATTTTTGGTATGCTTTCCGAAGCTTACCTTCACCTTGTCCGAGCCAAATTTGAGATGGCCTTAGGAAGGTTTGAGAATGCAGTTTCCTCTGTGGAGAAAGCTGTCCATATTGATCCTCGTAATGTAGAAATAGCATTGTTACTTAGTAATGTACGTCTAGTAGCGAGAGCCCGGGCCCGTGGAAATGATCTCTTTAAATCCGAGAGGTTTACTGAAGCTGGATCTGCTTATGGGGAAGGTCTTAAGCTCGACCCTACGAACTCAGTTCTCTATTGTAATAGAGCAGCTTGTTGGTTTAAGATTGGGATGTGGGAACGATCCATTGAGGATTGCAACGAAGCATTACGTATCCAACCAAATTATACAAAAGCCCTTCTTAGAAGGGCGGCTTCAAACACTAAGCTTGAAAGATGGACAGATGCTGTTAGAGACTATGAGGTTTTAAGGAGGGAACTTCCAGACGACAAAGAAGTAGCCGAGGCTCTATTTCATGCCCAAGTTTCATTGACGAAATCTCGTGGTGAAGAAATTGTCGATATGAAGTTTGGTGGTGAAGTGGAAGAAGTTTCCGGAATCGAGCAGTTCCGAGCTGCAGTATCCTTTCCAGGTGCAACTGTTGTTCATTTCGAAGCGGCTTCTGACTTGCAATGCAAGCAAATATCACCCTTTCTTCACATGCTTTGTAGCCGCTACCCCTCCATAAATTTCCTCAAGGTGGATATTGAAGAAAGTCCTGCAATAGCAAGTGCAGAGAATATCCGGATCATACCAACATTCAAGATTTACAAAAACGGAAACAGAGTGAAAGAGATTGTGTGTCCGAGTAGAGACCTGTTGGAACACTCTGTGAGGTATTATAGCTTCTAG 2121 47.95 MSHSGNPNNAEQSFDSLTDRFRDSLSCGADKPDFRELDLGSPVSPLRTRQSGGGPAISSSSSSSGSVSGNPAPKRSDSGPNNHSGELSGSSESSPTAAESLRSDGIPRNFKPGHTRSNSGSNNPFIYSSQSSVTSPPTSPNVLPSGNICPSGKILKTGMASNRSTRTEVLGSGSGHYGHGSIIRGGAARSTVPEVSHMANARTTTSRGGSSGGVGSSSGGGGDLLKRGIVSMDPEDVKRAGNETYKRGHFAEALSLYDRAISLSPTNAAYRANRAAALTGLGRLHEAVAECEEAVRLDPNYGRAHHRLATLFVRLGQVDNARRHLFIIPGLQPDPLELQKLQFVEKCLRKCGDARKMGNWKSALREVDSAIASGSDSSPQLLMCRVEALLKLHQIEDAESTLSNIPKFEPSPSSSQARIFGMLSEAYLHLVRAKFEMALGRFENAVSSVEKAVHIDPRNVEIALLLSNVRLVARARARGNDLFKSERFTEAGSAYGEGLKLDPTNSVLYCNRAACWFKIGMWERSIEDCNEALRIQPNYTKALLRRAASNTKLERWTDAVRDYEVLRRELPDDKEVAEALFHAQVSLTKSRGEEIVDMKFGGEVEEVSGIEQFRAAVSFPGATVVHFEAASDLQCKQISPFLHMLCSRYPSINFLKVDIEESPAIASAENIRIIPTFKIYKNGNRVKEIVCPSRDLLEHSVRYYSF 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 904741 908719 + Conep06aG0019000.1 Cone6ag0188 439072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0188 706 ProSiteProfiles TPR repeat profile. 234 267 IPR019734 GO:0005515(InterPro)
Cone6ag0188 706 MobiDBLite consensus disorder prediction 44 100 - -
Cone6ag0188 706 Pfam Thioredoxin 611 693 IPR013766 -
Cone6ag0188 706 SUPERFAMILY TPR-like 378 563 IPR011990 GO:0005515(InterPro)
Cone6ag0188 706 Pfam Tetratricopeptide repeat 508 539 IPR019734 GO:0005515(InterPro)
Cone6ag0188 706 Gene3D Glutaredoxin 598 704 - -
Cone6ag0188 706 SUPERFAMILY Thioredoxin-like 509 694 IPR036249 -
Cone6ag0188 706 MobiDBLite consensus disorder prediction 157 171 - -
Cone6ag0188 706 Gene3D Tetratricopeptide repeat domain 233 592 IPR011990 GO:0005515(InterPro)
Cone6ag0188 706 ProSiteProfiles TPR repeat profile. 426 459 IPR019734 GO:0005515(InterPro)
Cone6ag0188 706 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 31 698 IPR044534 GO:0005737(PANTHER)
Cone6ag0188 706 MobiDBLite consensus disorder prediction 22 184 - -
Cone6ag0188 706 FunFam TPR repeat-containing thioredoxin TTL4 598 705 - -
Cone6ag0188 706 Pfam Tetratricopeptide repeat 240 300 - -
Cone6ag0188 706 SMART tpr_5 302 335 IPR019734 GO:0005515(InterPro)
Cone6ag0188 706 SMART tpr_5 234 267 IPR019734 GO:0005515(InterPro)
Cone6ag0188 706 SMART tpr_5 506 539 IPR019734 GO:0005515(InterPro)
Cone6ag0188 706 SMART tpr_5 472 505 IPR019734 GO:0005515(InterPro)
Cone6ag0188 706 SMART tpr_5 540 573 IPR019734 GO:0005515(InterPro)
Cone6ag0188 706 SMART tpr_5 426 459 IPR019734 GO:0005515(InterPro)
Cone6ag0188 706 SMART tpr_5 268 301 IPR019734 GO:0005515(InterPro)
Cone6ag0188 706 MobiDBLite consensus disorder prediction 200 225 - -
Cone6ag0188 706 SUPERFAMILY TPR-like 235 325 IPR011990 GO:0005515(InterPro)
Cone6ag0188 706 MobiDBLite consensus disorder prediction 112 146 - -
Cone6ag0188 706 CDD TRX_family 611 692 - -
Cone6ag0188 706 MobiDBLite consensus disorder prediction 200 217 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0188 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1371 Cone-Chr10:10682765 Cone6ag0188 Cone-Chr6:904741 1.82E-216 dispersed
Cone6ag0188 Cone-Chr6:904741 Cone9ag1490 Cone-Chr9:10951437 1.45E-105 dispersed
Cone3ag1443 Cone-Chr3:33149797 Cone6ag0188 Cone-Chr6:904741 9.61E-204 wgd
Cone6ag0188 Cone-Chr6:904741 Cone9ag0214 Cone-Chr9:917068 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g122 . . . . . . . . . . Cma01g01244 Cma09g00815 Car01g01065 Car09g00731 . Cpe06g00508 Cpe02g00673 Bhi09g03502 Tan01g4331 . . . Mch11g1016 . Cla11g01716 Cam11g1785 Cec11g1806 Cco11g1811 Clacu11g1944 Cmu11g1755 Cre11g2163 Cone6ag0188 Cone9ag0214 . . Lsi04g02020 Csa04g02292 Chy07g00029 Cme07g00542 . . . . . . . . . Cmo01g01299 Cmo09g00809 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005247 2 2 2 1 2 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38