Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0206 ATGGGTTTTGTGTTTTGGGCCGCTAAGACTGTTAATGTTGTTGTAGCATATGGCTTCCTGGTTTTGATTTTCCTCGCATCTTTTGGATCCGACGCCCAGATTTTGCCCGAAGAAGAAGTGAAAACTCTTCAAGCAATATCTTCAAAACTAGAGAAGTTGAATTGGGAGGTGAATCAGAATTCTTGCATTAAAGGTGAAGGATTTGATAACGGAGTCACCATTGCAGACAAAATCTTAAGGAATGTAACCTGCAATTGCTCTTCTACTCTTTGCCATGTCACGCTAATAGAGCTGAAGGGTCTCAATTTAACCGGGACTTTTCCGGCTGAATTCGGAAACCTCACTCAGTTACGGGTCCTTGATCTCACTCGCAATTATATCAATGGAACAATTCCTCCAACTTTGGCTCGCATTCCCCTTGTAAATCTGTCACTTCTCGGAAACCGGCTGAGCGGTCCGATTCCTAAAGAAATCGGTGACATTCATACCCTTCAAGAGCTGGTCTTGGAAGATAATCTCTTAGAAGGAAATCTTCCGGACAGCCTCGGAAATTTGACGAGCTTGGACAGACTATTGCTGTCCGCAAACAACTTTACAGGAACAATACCAGAATCATATGGCCAGTTAAAGAACTTAACTGATTTTAGGATAGACGGGAATGGGATAACCGGGAAGCTGCCGGAATTCATAGGCAATTGGATCAAGCTTGACAGATTGGATATGCAGGGAACATCTATGACAACACCGATCCCTTCGACATTATCTCAGTTAACTAACTTAACCGAACTGAGGATTTCTGATTTGAATGGATTGACAACGAGCTTCCCTGATCTGTCAGGAATGACAAAATTAGAAGAATTGGTCTTGAGAAATTGCTTAATTACGGGAACAATCCCGGACAATATCGGACAAATGAGTGTACTAAAAACTTTGGACTTGAGCTTCAACATGTTAACGGGTTCGATTCCTGGGACATTTCAAACACTTATCGATAATGCAAACAACAAATACATGTTTATGAGCAACAACTCATTGAGCGGCCAAGTATCGTCTTGGATAACAGACAGTCAGAAGAACATAGATTTATCTTATAACAATTTCACAGGATCTTCTGAAACTAGTTGTAGACAGTCGCCGGTGAATTTAGTTTCAAGTTTTTCATCCATGGCAGATGATGAAAATGTGTGGTGCCTCGAGAAAGATCTCCCGTGCTCGGAGAAAGCTAATTATCATTCGTTTTTTATCAACTGTGGAGGAAGCAAGCTGGAGATTGACGGAAACAACTACGAAGAAGACTTAACAAGAGAAGGCCAATCAAACTTCTTTTCAGCTTCCGAGAAATGGGGTTGTAGTAGTGCAGGTACCTACATGGGGTTGGAGGATGCAGACTACATAGTATCAAATGATTTTGATCTGAACATAAGCGGTCCCGGATTCTACCAAACGGCTCGGGTTGCTCCTGTTTCACTCAAGTACTATGGTTTTTGCTTGAGGAAAGGTAGTTACAATGTGAAGCTGCATTTTGCAGAAATCATGTATAGTAACGATCAAACATTTAGTAGCCTTGGAAGGCGCTTATTCGACGTATCAATTCAAGGGAGATTGATTAAGAAGGATTTTAACATAATGGAAGAAGCCGGCGGGGTTGGTAAGGGGTTTGTTTTGGAAGAGAAAGATGTCGTTGTTAATGGAAGCACTCTGGAGATTCATTTATATTGGGCTGGAAAAGGAACTACTGCTATTCCAGATAGAGGTGTATATGGACCTCTTATATCTGCTATCACAGTCACACCAAACTATAAAGTCGACACGGGAAGCCTATCTGCCGGAGCTATAGCAGGCATTGTAGTTGCTTCATGTGTGCTTCTCTTATTAGTATTGGGAGCCCTCAGAAGAATGGGTTACTTAGGGAGGAAGGACATTGAGGATAAAGAATTACGCGGCCTAGATTTGCAAACCGGTTTTTTCACCTTGAGACAAATCAAAGCTGCAACTGGTGACTTTGACCCTGAAAATAAAATAGGCGAAGGTGGTTTCGGGCCAGTCTACAAGGGTGAATTGTCGGATGGCACTTTAATTGCCGTAAAGCAGCTATCTTCAAAATCGAAACAGGGAAACCGTGAATTTGTGACAGAGATTGGCATGATATCTGGATTGCAACACCCGAATCTTGTTAAGCTTTATGGTTGTTGTATAGAAGGAAACCAAATGCTACTTATTTATGAGTACCTCGAAAATAACTCTCTTGCCCGAGCACTTTTCGGTACAGGGGAGCGAAGATTACACTTGGACTGGTCTGTGAGGAAGAAGATATGCTTAGATATAGCAAAGGGATTGGCTTACCTTCATGAGGAATCAATGCTGAAAATTGTTCATAGAGATATAAAGGCTACAAATGTGTTGCTTGATAGGAATCTAAATGCCAAGATTTCCGATTTTGGTTTAGCTAAGCTTAATGAAGAGGATAATACTCATATAAGCACAAGAGTTGCCGGCACAATAGGCTATATGGCTCCTGAGTACGCAATGAGAGGTTACTTGACCAACAAGGCAGATGTTTACAGTTTCGGAATTGTTGTGTTAGAGCTTGTCAGTGGGAAAAGCAACACGAATTACAGGCCAAAGGAGGAGTTTGTATATCTTCTTGATTGGGCATATGTTTTACAAGAGCAAGGGAACCTTTTAGAACTTGTCGATCCTAGCCTTGATTCAAACTATTCACATGAAGAGGCAACGACAATGCTCAATATAGGTCTTTTATGCACCAACCCGTCTCCTACTCTTAGACCATCCATGTCATCTGTTGTGAGCATGCTTCAAGGCAACATTGCAGTGCAAGCACCGATCATTAGGCGCAATTCGATGGAACAAGATGCACGTTTTAAAGCCTTTGAGAGGCTCTCTCAGAATAGTCAATCTTATGTCTCGGAATCTTCGCAAGACATGAGTCAGGTACAAAAGAGCACCATGTTAACAGATGGTCCATGGGTTGACTCCTCGATTTCGGCCGGATCTTCCTCGACGAAACTCATCAAGGAGACCTAG 3045 42.04 MGFVFWAAKTVNVVVAYGFLVLIFLASFGSDAQILPEEEVKTLQAISSKLEKLNWEVNQNSCIKGEGFDNGVTIADKILRNVTCNCSSTLCHVTLIELKGLNLTGTFPAEFGNLTQLRVLDLTRNYINGTIPPTLARIPLVNLSLLGNRLSGPIPKEIGDIHTLQELVLEDNLLEGNLPDSLGNLTSLDRLLLSANNFTGTIPESYGQLKNLTDFRIDGNGITGKLPEFIGNWIKLDRLDMQGTSMTTPIPSTLSQLTNLTELRISDLNGLTTSFPDLSGMTKLEELVLRNCLITGTIPDNIGQMSVLKTLDLSFNMLTGSIPGTFQTLIDNANNKYMFMSNNSLSGQVSSWITDSQKNIDLSYNNFTGSSETSCRQSPVNLVSSFSSMADDENVWCLEKDLPCSEKANYHSFFINCGGSKLEIDGNNYEEDLTREGQSNFFSASEKWGCSSAGTYMGLEDADYIVSNDFDLNISGPGFYQTARVAPVSLKYYGFCLRKGSYNVKLHFAEIMYSNDQTFSSLGRRLFDVSIQGRLIKKDFNIMEEAGGVGKGFVLEEKDVVVNGSTLEIHLYWAGKGTTAIPDRGVYGPLISAITVTPNYKVDTGSLSAGAIAGIVVASCVLLLLVLGALRRMGYLGRKDIEDKELRGLDLQTGFFTLRQIKAATGDFDPENKIGEGGFGPVYKGELSDGTLIAVKQLSSKSKQGNREFVTEIGMISGLQHPNLVKLYGCCIEGNQMLLIYEYLENNSLARALFGTGERRLHLDWSVRKKICLDIAKGLAYLHEESMLKIVHRDIKATNVLLDRNLNAKISDFGLAKLNEEDNTHISTRVAGTIGYMAPEYAMRGYLTNKADVYSFGIVVLELVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLDSNYSHEEATTMLNIGLLCTNPSPTLRPSMSSVVSMLQGNIAVQAPIIRRNSMEQDARFKAFERLSQNSQSYVSESSQDMSQVQKSTMLTDGPWVDSSISAGSSSTKLIKET 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 969913 975997 - Conep06aG0020800.1 Cone6ag0206 439090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0206 1014 Pfam Leucine Rich Repeat 116 136 IPR001611 GO:0005515(InterPro)
Cone6ag0206 1014 Pfam Leucine Rich Repeat 283 305 IPR001611 GO:0005515(InterPro)
Cone6ag0206 1014 Pfam Leucine Rich Repeat 164 185 IPR001611 GO:0005515(InterPro)
Cone6ag0206 1014 Pfam Leucine Rich Repeat 308 329 IPR001611 GO:0005515(InterPro)
Cone6ag0206 1014 Pfam Protein tyrosine and serine/threonine kinase 671 938 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag0206 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 790 802 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag0206 1014 Gene3D Ribonuclease Inhibitor 213 395 IPR032675 -
Cone6ag0206 1014 Gene3D Transferase(Phosphotransferase) domain 1 744 961 - -
Cone6ag0206 1014 Gene3D Ribonuclease Inhibitor 38 206 IPR032675 -
Cone6ag0206 1014 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 36 269 - -
Cone6ag0206 1014 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 637 743 - -
Cone6ag0206 1014 CDD STKc_IRAK 674 941 - -
Cone6ag0206 1014 Pfam Malectin domain 413 594 IPR021720 -
Cone6ag0206 1014 SMART serkin_6 668 937 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0206 1014 SUPERFAMILY L domain-like 80 373 - -
Cone6ag0206 1014 FunFam Putative LRR receptor-like serine/threonine-protein kinase 744 951 - -
Cone6ag0206 1014 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 410 599 - -
Cone6ag0206 1014 Gene3D Phosphorylase Kinase; domain 1 638 743 - -
Cone6ag0206 1014 SUPERFAMILY Protein kinase-like (PK-like) 652 951 IPR011009 -
Cone6ag0206 1014 ProSiteProfiles Protein kinase domain profile. 668 950 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0206 1014 MobiDBLite consensus disorder prediction 975 1014 - -
Cone6ag0206 1014 Gene3D - 409 600 - -
Cone6ag0206 1014 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 22 964 IPR051824 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1407 Cone-Chr10:10929164 Cone6ag0206 Cone-Chr6:969913 1.12E-246 dispersed
Cone6ag0206 Cone-Chr6:969913 Cone6ag0936 Cone-Chr6:4814838 1.10E-217 dispersed
Cone6ag0206 Cone-Chr6:969913 Cone6ag0207 Cone-Chr6:977819 0 tandem
Cone1ag0229 Cone-Chr1:1463415 Cone6ag0206 Cone-Chr6:969913 8.71E-210 wgd
Cone14ag1027 Cone-Chr14:8568692 Cone6ag0206 Cone-Chr6:969913 0 wgd
Cone15ag1009 Cone-Chr15:8168530 Cone6ag0206 Cone-Chr6:969913 3.39E-183 wgd
Cone5ag1634 Cone-Chr5:11537601 Cone6ag0206 Cone-Chr6:969913 1.98E-211 wgd
Cone6ag0206 Cone-Chr6:969913 Cone9ag0235 Cone-Chr9:991865 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82908 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0206 - - - 0.0