Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0213 ATGCTGAAAATCAAGCCATGGAAGCTAGCCCAGAAAAAAACCGGAGAAGCCGATCTGGAAGAAGAAGAGTACAATGAAGATGATGGGATTGTCTGTGCTGTTTGTCAAAGCACAGATGGAGATCCGGCTGATCCGATTGTGCTCTGTGATGGATGCGATCTTATGATCCACGCTTCTTGTTATGGAAATCCCTTAGTTACGAGTATACCAGAAGGCGATTGGTTATGTGCTCAATGCTCTGCTTCTTCTTCCTCTTCGAACGAAAAACCCTCTGATTGTTGCTTATGTCCGATCAAAGGAGGTGCGATAAAACAAACTAAAGATGGTCGCTGGGCTCACATTGTGTGCGCACTTTATGTCCCAGAGGTGTTCTTTGAAGACCCTGAAGGGCGAGAAGGGATCGATTTCTCCATGGTGCCAAAGAGGAGGTGGAATGAGAAATGTTATGTCTGTAAAGAAGTTAGCGGGTGTGCTATTGATTGCTCTGAGCTAAACTGCACTCTGGCTTTTCATGTTGGTTGTGGGCTTAAGGAAGATCTTTGTATTGAGTACATAGAAGGGAGGAAGAAATGTGCTATTGTTGCTGGATTCTGTAAAACCCACAATAAATTGTGGGAGAAGCAACAACATACAGGGAAGTTCAAGATTGTGGCCAGAGATGAAGCGAAAGCCGAGTAG 678 44.69 MLKIKPWKLAQKKTGEADLEEEEYNEDDGIVCAVCQSTDGDPADPIVLCDGCDLMIHASCYGNPLVTSIPEGDWLCAQCSASSSSSNEKPSDCCLCPIKGGAIKQTKDGRWAHIVCALYVPEVFFEDPEGREGIDFSMVPKRRWNEKCYVCKEVSGCAIDCSELNCTLAFHVGCGLKEDLCIEYIEGRKKCAIVAGFCKTHNKLWEKQQHTGKFKIVARDEAKAE 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1004890 1005684 + Conep06aG0021500.1 Cone6ag0213 439097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0213 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 86 IPR013083 -
Cone6ag0213 225 PANTHER PHD FINGER PROTEINS 19 202 IPR050701 GO:0006357(PANTHER)
Cone6ag0213 225 Pfam PHD-finger 32 79 IPR019787 -
Cone6ag0213 225 SUPERFAMILY FYVE/PHD zinc finger 18 99 IPR011011 -
Cone6ag0213 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 204 IPR013083 -
Cone6ag0213 225 Pfam PHD-zinc-finger like domain 92 188 - -
Cone6ag0213 225 ProSiteProfiles Zinc finger PHD-type profile. 29 82 IPR019787 -
Cone6ag0213 225 SMART PHD_3 31 80 IPR001965 -
Cone6ag0213 225 ProSiteProfiles Extended PHD (ePHD) domain profile. 90 202 IPR034732 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0213 Cone-Chr6:1004890 Cone9ag0241 Cone-Chr9:1029375 3.86E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46268 PF06325 PrmA 2.00E-73 CL0063 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0213 K11380 - csv:101203744 329.717