Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0227 ATGCTATGGCTGCTCTCTGCTTTCAATTGCTGCTACCCCGCCGTCTACTTCATTTCTCTGATCTATCTCTTCTTGATCCATGAACGGTATGTTTTGGGATTGAAGAAGAAAATACAGTTCGAGGAAAGAAAGCAAGCTAATCAAAGAAGGGTACTTTCAGATTCTGAAACAGTTAGATGGTTGAACCATACGCTTGAAAAGATTTGGCCCATTTGTATGGAACAAATTGTTTCACAGAAGATTCTCCTCCCAATTGTACCTTGGTTCCTCGCCAAATACGAACCCTGGATTGCTAAGAAAGTTAAGGTCCGACATTTATACTTAGGAAGAACCCCTCCTATATTCACTGAAATCCGGGCCCTTCATCGACCTTCTGAGGATGATGACTTGGTTTTGGAATTGGGAATGAATCTTGTTACAGCTGATGATATGAGTGGAATACTTGATGTAAAGCTGAGGAAAAGAGTCGGTTTTGGAATCCGGACTAAGCTTCACCTGACCGGAATGCATGTCGAAGGAAAGGTCCTGGTTGGGATAAAGTTCCTTAAAGGTTGGCCATTCTTGGGCCGTTTAAGGTTATGTTTTGCTGAGCCACCTTATTTCCAGATGACTGTCAAGCCCATCTTTACACATGGGCTTAATGTTACAGAACTTCCCGGAGTTGCTGGATGGCTGGATAAGCTTTTATCCACTGTCTTTGAGCAGACCCTTGTTCAGCCCAACATGATGGTTGTTGACATGGGGAAATTTGTTTCCCCACAGCAAGAACCGTGGTTTTCCGTGGATGTAAAGGAACCTGTTGGTTATGTCAACGTGGAAGTTATTGAAGGAGCCGAAATGAAACCATCTGATCTTAATGGATTGGCTGATCCGTACTTGGTTGGTCAACTGGGTCCATACAAATTCAAGACTAAGACACACAGAAAAACATTAGCTCCGGCATGGCAAGAGGAATTCAAGATTCCCGTAATTTCATGGGAGTCTCAGAATGTTCTAACCATTAAAGTACATGACAAGGACAATTTAAAGTTTGATGATTTCCTCGGTGTCTGTTCTGTTAACGTTACTGATCTGAGGGACGGTCAAAGACACGATATGTGGCTGCCTCTTCAGAACATAAAACAAGGGAGGTTGCATCTTGCAATCACTGTACAAGATGTCAATTCGAAATTGAATGTTCAACCTTGTGACAAGGAAGTGTCTCCGAGAAATTCCATTGCAAGACAATCGGTCCATAAGGCGTCATTCTCGTCTCCATCTTCAGAAAAGTCCCCAAGAACAGGAGATGATTTCGAGCCCGTGGATATTGAAGGGCAGAAAGAGACAGGAATATGGGTTCATCACCCGGGAAGTGAAGTTCCAAAAACATGGGAGACTAGAGAAGGGAGGAGCAGACAATCAGATATTAAAATCGAAGGCAACACCAATGTATCTATTAACAACGATAGCTTCAACACTGATGATAACCTGGAGGAAAAGCATTCGAGGAATCCTGTCAGGAGGGGATTGAGAAAAATTGGATCTGTATTTCATAGAAGTTTCAAGAAGGACGATCTATCAGGCAACTTAGTCGAGTCATTGAGGTCTCCATATGCTAATTTGAGAGAAGTGAATGAAAAGGAGGGAGGCGTTAAGTTTGTTATGGAAGAAAACCTTTCCGGGGGGGGCACTTTGGGAGAGAATGTGAAAGATGATAAATCGACTAGTCCTGAAAAAACAGCTTCTCCAGGAAGTCCAACCGAGGGGGGTAATGTTTTCGAGAAATCCGCTAGGGGTATTAAACATGCTTTTTCACATAAGGATACGAAGAGAGATCAAGGGGACTGTTTGGAAATCAATGAGAGAGCTATCTCAGTTGATTCCGATTCCTCTTCCTCTGATGCTGAGCCAATATTGGCTTACTCTCCAGAAGCAGATGTTGTTCCAGTTATTTGTGGAGGTAATGATTTGTTCAATGTCAAAGGCCATGTGGTTCAATCGAGTCCGACTGAATCTGCCTTAGGTGATGCTAATCCAAAGGAACTGGAAAGTACCGAAAGCTCGGAAAAGGATCCTGTGACAAGCCAAGACTGCAATGTATAA 2082 42.99 MLWLLSAFNCCYPAVYFISLIYLFLIHERYVLGLKKKIQFEERKQANQRRVLSDSETVRWLNHTLEKIWPICMEQIVSQKILLPIVPWFLAKYEPWIAKKVKVRHLYLGRTPPIFTEIRALHRPSEDDDLVLELGMNLVTADDMSGILDVKLRKRVGFGIRTKLHLTGMHVEGKVLVGIKFLKGWPFLGRLRLCFAEPPYFQMTVKPIFTHGLNVTELPGVAGWLDKLLSTVFEQTLVQPNMMVVDMGKFVSPQQEPWFSVDVKEPVGYVNVEVIEGAEMKPSDLNGLADPYLVGQLGPYKFKTKTHRKTLAPAWQEEFKIPVISWESQNVLTIKVHDKDNLKFDDFLGVCSVNVTDLRDGQRHDMWLPLQNIKQGRLHLAITVQDVNSKLNVQPCDKEVSPRNSIARQSVHKASFSSPSSEKSPRTGDDFEPVDIEGQKETGIWVHHPGSEVPKTWETREGRSRQSDIKIEGNTNVSINNDSFNTDDNLEEKHSRNPVRRGLRKIGSVFHRSFKKDDLSGNLVESLRSPYANLREVNEKEGGVKFVMEENLSGGGTLGENVKDDKSTSPEKTASPGSPTEGGNVFEKSARGIKHAFSHKDTKRDQGDCLEINERAISVDSDSSSSDAEPILAYSPEADVVPVICGGNDLFNVKGHVVQSSPTESALGDANPKELESTESSEKDPVTSQDCNV 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1061636 1065528 - Conep06aG0022900.1 Cone6ag0227 439111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0227 693 MobiDBLite consensus disorder prediction 550 586 - -
Cone6ag0227 693 MobiDBLite consensus disorder prediction 475 497 - -
Cone6ag0227 693 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 260 387 IPR035892 -
Cone6ag0227 693 CDD SMP_SF 77 246 - -
Cone6ag0227 693 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 54 248 IPR031468 GO:0008289(InterPro)
Cone6ag0227 693 MobiDBLite consensus disorder prediction 659 693 - -
Cone6ag0227 693 ProSiteProfiles C2 domain profile. 253 368 IPR000008 -
Cone6ag0227 693 Gene3D C2 domain 253 387 IPR035892 -
Cone6ag0227 693 Pfam C2 domain 268 370 IPR000008 -
Cone6ag0227 693 MobiDBLite consensus disorder prediction 395 434 - -
Cone6ag0227 693 MobiDBLite consensus disorder prediction 395 424 - -
Cone6ag0227 693 SMART C2_3c 269 367 IPR000008 -
Cone6ag0227 693 PANTHER C2 DOMAIN-CONTAINING PROTEIN-LIKE 2 665 IPR052847 -
Cone6ag0227 693 MobiDBLite consensus disorder prediction 446 465 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0227 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1001 Cone-Chr15:8120797 Cone6ag0227 Cone-Chr6:1061636 7.33E-184 wgd
Cone6ag0227 Cone-Chr6:1061636 Cone9ag0260 Cone-Chr9:1095015 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g874 Blo03g00728 . . . . . . . . . . . . . . . . Bhi09g03594 . . . Hepe01g1487 . . . . . . . . . Cone6ag0227 Cone9ag0260 . . Lsi04g01952 . . . . Blo10g00713 . Bda12g00801 . . Bma07g01119 . . . Cmo09g00683 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004301 1 2 4 3 2 0 2 1 0 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 41