Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0242 ATGCTTCAGAGCTTAGTTCAATCTCCAATCAGTTCAAGTTCGAATCCGAATCCGAAACCTAATACTCCAATCTCTGCTACGAAGAGTAAGCGCGCTGACCGTGAGCTCACTCATAGCGGCAGCGATTCCTCCGGCGAAGAACCTTCCACGAAACGCCCAAACGTCTACGGAGATGCTACAATTTCCGGCGAGAAAACCATCGAAGAACGCGAAGGAGAAGAAGGAGAGGATGAAGTGGTAGTACCAGTCAAGGAGGCCGAATCAAGTGGTTTGAGATTGATAGGGCTTTTGCTCCAATGCGCCGAGTGTGTCGCCGTGGACAATCTCCACCAAGCCAGCGATCTTCTACCGGAAATCGTCGAGCTCTCGTCGCCGTTCGGTTCGTCGCCTGAAAGAGTAGGTGCTTACTTCGCCCACGCGCTCCATGCGCGCGTGATAAACTCATGCTTAGGTGCCTACTCGCCCCTGACGATCAAAGCTCTTACTCACATTCAATCGCAGAAGATCTTCAACGGTCTGCAATCCTACAATTCGATCAGCCCGCTGATCAAGTTCTCTCACTTCACGGCCAACCAAGCAATTTTCCAAGCATTGGACGGCGAGGATTGCATCCACGTCATCGACCTCGACATAATGCAAGGCCTTCAATGGCCAGGATTATTCCACATCCTCGCTTCCCGGTCGAAGAAGATCCGATCCATGAGAATAACCGGGTTCGGATCATCTTCCGAGTTGCTCGAGTCAACCGGGCGAAGACTCGCCGATTTCGCGAGCTCACTCGGTCTCCCCTTCGAGTTCCATCCTCTGGAGGGAAAAATAGGTAATTTGACCAATCTGAGTCAACTCGGGGTGAGGCTGAGCGAGGCTACGGTGGTGCACTGGATGCACCATTGTCTGTACGACATAACGGGGAGTGATGTAGGGACGTTGAAATTGTTGACTTCATTAAGACCGAAACTGATCACGATCGTCGAACAGGATTTGAGTCAGGGCGATAGTTTCCTAGGAAGATTCGTGGAGGCATTGCATTACTACAGCGCGTTGTTCGACGCGCTAGGGGAAGGTTTAGGTGTGGAGAGCCTAGAGAGGCATACGGTGGAGCAGCAGTTGTTTGGGTCTGAGATTAGGAACATTGTGGCCGTGGGTGGGCCCCAGAGGACAGGAGAGATCAAGTTCGAGAGGTGGGGGGAGGAGCTAATGCGGGTCGGGTTCATGCCCGTTTCGCTTGGAGGAAGCCCAGCGGCCCAAGCGAGCTTGTTGCTCGGGATGTTCCCTTGGAAAGGGTACACATTGGTGGAGGAAAATGGGTGCTTGAAATTGGGGTGGAAGGATCTCTCTTTACTCACCGCCTCTGCATGGCGGGCGTCCGATTGA 1374 52.91 MLQSLVQSPISSSSNPNPKPNTPISATKSKRADRELTHSGSDSSGEEPSTKRPNVYGDATISGEKTIEEREGEEGEDEVVVPVKEAESSGLRLIGLLLQCAECVAVDNLHQASDLLPEIVELSSPFGSSPERVGAYFAHALHARVINSCLGAYSPLTIKALTHIQSQKIFNGLQSYNSISPLIKFSHFTANQAIFQALDGEDCIHVIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLESTGRRLADFASSLGLPFEFHPLEGKIGNLTNLSQLGVRLSEATVVHWMHHCLYDITGSDVGTLKLLTSLRPKLITIVEQDLSQGDSFLGRFVEALHYYSALFDALGEGLGVESLERHTVEQQLFGSEIRNIVAVGGPQRTGEIKFERWGEELMRVGFMPVSLGGSPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWRASD 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1123729 1125489 - Conep06aG0024400.1 Cone6ag0242 439126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0242 457 MobiDBLite consensus disorder prediction 1 79 - -
Cone6ag0242 457 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 69 453 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0048366(PANTHER)|GO:0090610(PANTHER)
Cone6ag0242 457 ProSiteProfiles GRAS family profile. 84 454 IPR005202 -
Cone6ag0242 457 Pfam GRAS domain family 95 454 IPR005202 -
Cone6ag0242 457 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1007 Cone-Chr4:8713276 Cone6ag0242 Cone-Chr6:1123729 1.30E-133 dispersed
Cone6ag0242 Cone-Chr6:1123729 Cone7ag1134 Cone-Chr7:8539060 1.82E-136 dispersed
Cone6ag0242 Cone-Chr6:1123729 Cone9ag0274 Cone-Chr9:1182967 6.91E-297 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46271 PF00069 Pkinase 6.40E-46 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0242 K27742 - vvi:100854772 672.544