Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0261 ATGGTAGAGTGCAAATCCATGGAGTTGGAGAACTATGAGGAAGGAGTTGTAGTTCGAAAAGTATGTGCACATGGAGTCTGCATACATACAACAGAAGTTGAAGCAAGGCTTGACGAGGGAAATATTCAAGAAGCAGAATCTGCATTACGAGAGGGCCTATCTTTAAATTTTGAGGAAGCCAGAGCCCTTCTTGGAAAATTAGAGTATCAAAGAGGCAATGTAGAAGGTGCCCTACGTGTTTTTGATGGCATAGATCTCCAAGCAGCCATTCAGAGATTACAGCCTTCCATTTCTGAGAAGACACCTTCAAAAAAGGCTCGTTCTCGTACTGAATCTCGCGATGCAGTCTCACAGCATTCTGCTAACCTAGTGCTTGAAGCCATATATCTAAAAGCAAAATCTCTTCAAAAGCTTGGGAAAGTGACTGAGGCTGCGAGTGAGTGTAAAAGCGTCCTTGATGCAGTGGAGAAGATATTCCATCTGGGCATACCTGATGAGCAAGTGGACAGTAGGTTGCAAGAGACAGTCAGCCAAGCTGTAGAGCTGCTTCCTGAGCTCTGGAAGCAGGCAGGTCATTACCAGGAAGCAATACTGGCCTATAGACGAGCCCTCCTAAGTCAGTGGAACCTTGATAATGATTGTTGTGCAAGGATTCAAAAAGGGTTTGCAGTGTTTTTGCTGTATAGTGGAGTAGAGGCTGGTCCTCCTAGTTTAGTTGTTCAGGTTGAAGGTTCATTTGTACCCAAAAACAATATGGAAGAGGCGATTCTACTTTTGATGGTTCTTTTAAGAAAATTTTTCCTTGGAAGAATAAAGTGGGACCCATCAGTTATGGAGCATCTAACATTTGCACTCTCTTTGTGCAACCAAACTTCTGTATTAGCAAAGCAACTTGAAGAAATCATGCCTGGAGTTTATCAACGTGTGGATAGATGGAAGTCTTTAGCTCTTTGTTACAGTGGGGCTGGACAAAATAAAGCTTCTTTGAATGTATTGAGAAAGTCGTTACACAAACATGAACTACCAGATGATGTAATGACATTGTTGTTAGCTGCTAAAGTCTGTAGTGAGGATCCTTATCTTGCAGCAGAAGGGGTTGGATATGCAAGAAAGGCAATTAGCAATGCAACAGGAAGAGAAGAGCATTTAAAGGGCGTGGGCCTACGCCTGTTAGGTCTCTGTTTGGGAAAGCAAGCCAAGGTTTCTTCCTCCGACTTTGAGAGATCCCGTCTTCAATCCGAGGCATTGAAGTCTCTAGAAGGGGCGGCTTCTTTGGAACATAATAATCCGGATCTGATATTTGAATTAGGTACTCAATATGCAGAACAGAGGAATCTGAATGTTGCTTTGCGATATGCAAAGAAGTATATTGATGAAACAGGTGGCTCTGTCTTAAAGGGATGGAGGTTGCTTGCTCTTATTTTGTCTGCTCAAAAGCGCTTTTCAGAGGCTGAAGTGGTCATTGATGCTGCTTTAGATGAAACCACTACATGGAGCCAAGGAACACTTCTTAGACTTAAGGCAAAGCTGAAGATCTCTCAGTCACTACACATGGATGCCATTGAGACTTACCGTTACCTCCTGGCATTAGTCCAGGCCCAAAGGAAATCATTTGGACCTCTATCAATCATTCCTCGGGTTGAGGATGATGAGGTCAATGAATTTGAAGTTTGGCATGGCTTAGCAAATCTCTACTCGAGCCTTTCACATTGGAAAGATGCAGAGGTGTGTTTGGGGAAAGCCAGAGAGCTTAAGCCATTCTCTGCTGAAACGCTGCATACAGAAGGCGATATGTGTCAAGGACGTGGTCAAATCCAAGAGGCTTTCATTGCTTATGTGAATGCTGTTCTATTGGAACCGGGTTATGTTCCTTGCAAGATTTTGGTTGGTTCTCTTTTATCAAAAGTGAGTTCAAAGGCATCTCCTATAGCAAGAAGCTTACTCTCAGATGGTTTGAGGATAGAGCCTACTAATCGTAAGGCTTGGTATTACTTGGGGATTATTCATCGAGATGATGGAAGAATATCAGATGCTGCAGATTGCTTCCAGGCTGCTTCCATGCTTGAAGAAGTCGATCCCATCGAAAGCTTTAGCAATATTCTTTGA 2106 43.07 MVECKSMELENYEEGVVVRKVCAHGVCIHTTEVEARLDEGNIQEAESALREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPSISEKTPSKKARSRTESRDAVSQHSANLVLEAIYLKAKSLQKLGKVTEAASECKSVLDAVEKIFHLGIPDEQVDSRLQETVSQAVELLPELWKQAGHYQEAILAYRRALLSQWNLDNDCCARIQKGFAVFLLYSGVEAGPPSLVVQVEGSFVPKNNMEEAILLLMVLLRKFFLGRIKWDPSVMEHLTFALSLCNQTSVLAKQLEEIMPGVYQRVDRWKSLALCYSGAGQNKASLNVLRKSLHKHELPDDVMTLLLAAKVCSEDPYLAAEGVGYARKAISNATGREEHLKGVGLRLLGLCLGKQAKVSSSDFERSRLQSEALKSLEGAASLEHNNPDLIFELGTQYAEQRNLNVALRYAKKYIDETGGSVLKGWRLLALILSAQKRFSEAEVVIDAALDETTTWSQGTLLRLKAKLKISQSLHMDAIETYRYLLALVQAQRKSFGPLSIIPRVEDDEVNEFEVWHGLANLYSSLSHWKDAEVCLGKARELKPFSAETLHTEGDMCQGRGQIQEAFIAYVNAVLLEPGYVPCKILVGSLLSKVSSKASPIARSLLSDGLRIEPTNRKAWYYLGIIHRDDGRISDAADCFQAASMLEEVDPIESFSNIL 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1199416 1203169 - Conep06aG0026300.1 Cone6ag0261 439145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0261 701 FunFam NPG1 546 695 - -
Cone6ag0261 701 SUPERFAMILY TPR-like 56 206 IPR011990 GO:0005515(InterPro)
Cone6ag0261 701 PANTHER PROTEIN NPG1 22 698 IPR043376 -
Cone6ag0261 701 Gene3D Tetratricopeptide repeat domain 28 230 IPR011990 GO:0005515(InterPro)
Cone6ag0261 701 Pfam Tetratricopeptide repeat 32 84 - -
Cone6ag0261 701 SMART tpr_5 659 692 IPR019734 GO:0005515(InterPro)
Cone6ag0261 701 SMART tpr_5 125 158 IPR019734 GO:0005515(InterPro)
Cone6ag0261 701 SMART tpr_5 555 588 IPR019734 GO:0005515(InterPro)
Cone6ag0261 701 SMART tpr_5 309 342 IPR019734 GO:0005515(InterPro)
Cone6ag0261 701 SMART tpr_5 465 498 IPR019734 GO:0005515(InterPro)
Cone6ag0261 701 SMART tpr_5 589 622 IPR019734 GO:0005515(InterPro)
Cone6ag0261 701 SUPERFAMILY TPR-like 468 686 IPR011990 GO:0005515(InterPro)
Cone6ag0261 701 Gene3D Tetratricopeptide repeat domain 249 542 IPR011990 GO:0005515(InterPro)
Cone6ag0261 701 Gene3D Tetratricopeptide repeat domain 543 695 IPR011990 GO:0005515(InterPro)
Cone6ag0261 701 SUPERFAMILY TPR-like 37 486 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1615 Cone-Chr4:12274792 Cone6ag0261 Cone-Chr6:1199416 2.69E-171 dispersed
Cone6ag0261 Cone-Chr6:1199416 Cone7ag1335 Cone-Chr7:9735316 3.05E-51 dispersed
Cone11ag0778 Cone-Chr11:5968850 Cone6ag0261 Cone-Chr6:1199416 1.31E-201 transposed
Cone4ag0348 Cone-Chr4:1595449 Cone6ag0261 Cone-Chr6:1199416 5.81E-216 transposed
Cone6ag0261 Cone-Chr6:1199416 Cone9ag0296 Cone-Chr9:1275625 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0261 K21843 - csv:101206641 1108.59