Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0263 ATGAAGCTCTCTTCGTCCGGGCTTAATCACCAGACTTCTCTCGAGGAGGGGGAGAAGAAGTGTTTGAATTCGGAGCTATGGCATGCCTGCGCCGGCCCTCTAGTTTCGCTTCCTCAAGTAGGAAGCCGAGTAGTCTACTTTCCACAAGGTCACAGCGAGCAGGTTGCTGCTTCAACAAAGAAGGAAGTGGATGCTCATATTCCTAATTACCCTAACCTACCCCCACAACTTATCTGCCAGCTTCATAATCTGACTATGCATGCTGATGTAGATACTGATGAAGTTTATGCTCAAATGACCTTGCAACCTCTCAATTCAGAAGAGCAAAAGGATTTGTACTTGCTTCCTGCTGAATTAGGCACACCTAGCAAACAGCCGACTAATTATTTCTGTAAAACATTGACTGCAAGTGACACTAGCACTCATGGAGGATTTTCAGTTCCTCGCCGGGCAGCTGAAAAAGTCTTTCCTTCTCTTGATTTCTCACTACAGCCTCCAGCTCAAGAATTAATAGCGAAGGATCTTCATTGTAATGAATGGAAATTTAGACATGTATTTCGAGGGCAGCCCAAGAGGCATCTTCTTACAACAGGATGGAGTGTGTTTGTCAGTGCAAAAAGACTTGTGGCTGGTGATTCAGTTATCTTTATTTGGAATGAAAAGAATCAGCTGCTAGTGGGACTCCGTCGAGCAAACCATCCACAGATCATGATGCCTTCATCTGTTTTATCAAGTGCCAGCATGCACATTGGCCTTCTTGCTGCTGCTGCTCATGCAGCTGCTACCAATAGTCCCTTTACTATATTCTTTAACCCAAGAACTAGTCCTTCAGAATTTGTCATATCCCTGGCTAAGTATGTCAAAGCAGTCTATTACACACGAATTTCAGTGGGCGTGCGATTTAGAATGCTGTTTGAGACTGAAGAGTCAAGTGTCCGTAGGTTTATGGGTACAATTACTGGAATAAGTGACTTAGATCCTGTTCGCTGGCCAAATTCCCACTGGCGCTCTGTGAAGGTTGGATGGGATGAATCTGCTGCTGGAGAGAAACAACCAAGAGTATCTTTGTGGGAGATTGAGCCAATAACAACATTTCCGATGTATCCATCTCCATTTGCCCTTAGATTGAAGCGACCTTGGTCATCAGGACTGCCATCTTTCAATGGGGTTGGAGATATGGGGATGCAATCCTTGAACTTCCAGGCCTTTGGAATGACGCCCCCCCTATTGCAGTCAAGGCCAAATGATTTAATTCCCACTCAATTACCCGATGTATATCAAGCAATGGCAGCTGCTGCTGCTTTTCAAGATTCCAGGACCTTAGATTCCTTCAAGTGCCCTCATCCTCAATCTCTTCTTCAATCCCCACGGACCCAAGATGCTTTCAGCGAATCTGCTGCTTTAGTCCAGAGACAAACTCTGGAGCAATCCCATGCTCAGAAGAAGACTTTCCTCCACAGTTTTCAAGAAAACCAGACTCCCTCACAAGCTCAGCTTCTACAACAGTTACCGTGTTTCCATCCAGGTCGTAATCAGCCGCAGCAGCAGCAGCATATGCAACAGTCTATGCACCTTCACCAGTCAATCCCTAATGTCATGTCTACAATATCTAATCCCACATCAGTCACATCGGGGGTTTCTTCTATGCAAAGTATATTAGGTTCATTAGCACAGGATGGAGCTCCTGCTTTAGTCAACTTTTCCGGCATGGACTCCTCAATTTCTTCTGCCTTTTTATCCAAGCAAGTCCCTGTAGAGCCTCCTCACTTTCCTTCTGGGCCTACTGAAGGTGTAGCAGCCCAAGTTGACCAATTGGGGGTCCCACATTCAAATGTCTTTGAACTCGGAAATTTGCCTCCACTCCCCTTTGGATGGCAATGTTCTAATAATTTCTTACCTGGGGTTAACATGGATTCTTCATCTCTTTTGCTGCCCAATGTTTCTCGAGAATTGAGCAATGCTAGCAGTGAAAATGATTTCTTATCCATGCCCTTCTCTGCTGACAAATTTACAAACTCTGGGCCCACTGATTTTCCACTGAACTCCAACATGAGAACTACTACTAGCTGTGCTGAAGAATCGGGCCTTTTGCAATCATCCGAAAATTTCGAGCAAGTAGATCCCACCCCAAACAGAACCTTTGTGAAGGTACACATGTCAGGGTCCTTTGGAAGGTCACTAGACATATCTAGGTTTAGCAGCTACAGGGAGCTGCGAAGCGAGCTTGCTCGCATGTTTGGACTTGAAGGCCTCTTGGAGGACCCTCAGAGATCAGGCTGGCAGCTTGTATTTGTCGACAGAGAGAATGACATTCTTCTCCTAGGCGATGATCCTTGGCAGGAATTTGTAAATAACGTGTCTTATATCAAGATTCTTTCCCTGCATCAAATGCAGCAAATGGGGAAGGAAGTTCTTCTTAACACTCCAACATCTTCTATTCAAGCTCACAAGATCTCAGATGGTAGTAACGGTTATTACGATGACTATGAGAACCAGCAGGAAGGAAGAAACTAA 2514 45.11 MKLSSSGLNHQTSLEEGEKKCLNSELWHACAGPLVSLPQVGSRVVYFPQGHSEQVAASTKKEVDAHIPNYPNLPPQLICQLHNLTMHADVDTDEVYAQMTLQPLNSEEQKDLYLLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIAKDLHCNEWKFRHVFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLVGLRRANHPQIMMPSSVLSSASMHIGLLAAAAHAAATNSPFTIFFNPRTSPSEFVISLAKYVKAVYYTRISVGVRFRMLFETEESSVRRFMGTITGISDLDPVRWPNSHWRSVKVGWDESAAGEKQPRVSLWEIEPITTFPMYPSPFALRLKRPWSSGLPSFNGVGDMGMQSLNFQAFGMTPPLLQSRPNDLIPTQLPDVYQAMAAAAAFQDSRTLDSFKCPHPQSLLQSPRTQDAFSESAALVQRQTLEQSHAQKKTFLHSFQENQTPSQAQLLQQLPCFHPGRNQPQQQQHMQQSMHLHQSIPNVMSTISNPTSVTSGVSSMQSILGSLAQDGAPALVNFSGMDSSISSAFLSKQVPVEPPHFPSGPTEGVAAQVDQLGVPHSNVFELGNLPPLPFGWQCSNNFLPGVNMDSSSLLLPNVSRELSNASSENDFLSMPFSADKFTNSGPTDFPLNSNMRTTTSCAEESGLLQSSENFEQVDPTPNRTFVKVHMSGSFGRSLDISRFSSYRELRSELARMFGLEGLLEDPQRSGWQLVFVDRENDILLLGDDPWQEFVNNVSYIKILSLHQMQQMGKEVLLNTPTSSIQAHKISDGSNGYYDDYENQQEGRN 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1210550 1216055 - Conep06aG0026500.1 Cone6ag0263 439147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0263 837 SUPERFAMILY CAD & PB1 domains 709 788 - -
Cone6ag0263 837 CDD B3_DNA 129 230 IPR003340 GO:0003677(InterPro)
Cone6ag0263 837 Gene3D - 128 231 IPR015300 -
Cone6ag0263 837 SMART B3_2 130 232 IPR003340 GO:0003677(InterPro)
Cone6ag0263 837 Pfam Auxin response factor 256 338 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone6ag0263 837 FunFam Auxin response factor 128 232 - -
Cone6ag0263 837 Gene3D - 294 366 - -
Cone6ag0263 837 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 803 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone6ag0263 837 FunFam Auxin response factor 707 801 - -
Cone6ag0263 837 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677(InterPro)
Cone6ag0263 837 ProSiteProfiles PB1 domain profile. 712 799 IPR053793 -
Cone6ag0263 837 SUPERFAMILY DNA-binding pseudobarrel domain 115 259 IPR015300 -
Cone6ag0263 837 MobiDBLite consensus disorder prediction 816 837 - -
Cone6ag0263 837 FunFam Auxin response factor 294 366 - -
Cone6ag0263 837 Gene3D - 709 801 - -
Cone6ag0263 837 MobiDBLite consensus disorder prediction 816 830 - -
Cone6ag0263 837 Pfam B3 DNA binding domain 130 232 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1564 Cone-Chr5:10893332 Cone6ag0263 Cone-Chr6:1210550 5.04E-307 dispersed
Cone6ag0263 Cone-Chr6:1210550 Cone7ag1874 Cone-Chr7:12073372 7.61E-187 dispersed
Cone6ag0263 Cone-Chr6:1210550 Cone9ag0298 Cone-Chr9:1285154 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46273 PF07722 Peptidase_C26 9.00E-16 CL0014 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0263 K14486 - cit:102619942 1062.37