Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0279 ATGAGCGTCAGAGTTGGCATCGTCGGCCTCCCTAATGTCGGAAAATCCACTCTCTTCAATGCCGTCGTTGAGAATGGCAGAGCTCAAGCTGCTCATTTCCCTTTCTGTACAATAGTGCCCAATGTAGGTATAGTTGCAGTTCCAGATCCTCGTCTTCAAGTACTTTCTGATCTCAGCAAATCTCAACGAGCAGTCCCAGCGTCTATAGAATTTGTAGATATTGCTGGCCTAGTAAAATGTGCCAGTCGAGGAGAGGGATTATTGATTGCGTTTCAATTTGTACACTGTTTTGAGGATAATGACATTATTCATGTAAACGGAAAAGTTGATCCAAAGGATGATATTGATGTTATTAATTTAGGGCTCGTCTTCTCAGATCTGGAGCAGATTGAAAAGAGAATAGAGAAGCTCAAGAAAGGCAAGTCAAAGGATTCACAGTCCAAAACTAAGGAGGAAGCAGAAAAGTCTGCCTTGGAAAGAATCCAGCAGGCCCTTATGTATGGGAAACCTGCACGATCAGTAACTTTAACACATTTTGATAAGGAGGCAATCAAACACATGTGCTTGCTTACAAAGAAACCTGTTACACGTCACGAGTCTTGCATCAGGTTGAAATCTGGAGTAGTGACTGTTTCATCACAGGTTGAGTCTGAGCTTTCTGAACTTCCATCTGATGAGAGAGTAGAATATTTGACGTCTCTTGGTGTTAGTGAAAGTGGCCTTGGAAACCTTATCAGGACAACATATAGCCTATATTATTTTCCTTCGGAAACAAAAACCTGGACCATACTCGCAGGAATGACTGCACCTCAAGCTGCTGGAGTCATTCACTTGGACTTTGAGAAAGGTTTCATTCAAGCTGAGACGATAAGATGTCAAGTGGCTTACGATGATTATGTTGCTGCTAGCTCACTTGCTGCAGCGAGGGGGAAAGGACTTGAAGTTGATGATGGCTCTACCATTGTATTTCCATACACTACAGAACAAGGACACATTAAGTGA 1002 42.51 MSVRVGIVGLPNVGKSTLFNAVVENGRAQAAHFPFCTIVPNVGIVAVPDPRLQVLSDLSKSQRAVPASIEFVDIAGLVKCASRGEGLLIAFQFVHCFEDNDIIHVNGKVDPKDDIDVINLGLVFSDLEQIEKRIEKLKKGKSKDSQSKTKEEAEKSALERIQQALMYGKPARSVTLTHFDKEAIKHMCLLTKKPVTRHESCIRLKSGVVTVSSQVESELSELPSDERVEYLTSLGVSESGLGNLIRTTYSLYYFPSETKTWTILAGMTAPQAAGVIHLDFEKGFIQAETIRCQVAYDDYVAASSLAAARGKGLEVDDGSTIVFPYTTEQGHIK 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1292228 1295426 - Conep06aG0028100.1 Cone6ag0279 439163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0279 333 Gene3D - 106 193 IPR023192 -
Cone6ag0279 333 FunFam Ribosome-binding ATPase YchF 103 193 - -
Cone6ag0279 333 Gene3D - 49 313 IPR012675 -
Cone6ag0279 333 Gene3D - 5 252 IPR027417 -
Cone6ag0279 333 Pfam 50S ribosome-binding GTPase 4 106 IPR006073 GO:0005525(InterPro)
Cone6ag0279 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 251 IPR027417 -
Cone6ag0279 333 CDD YchF 5 251 IPR041706 -
Cone6ag0279 333 PIRSF EngD 196 327 IPR004396 GO:0005524(InterPro)|GO:0005525(InterPro)|GO:0016887(InterPro)
Cone6ag0279 333 PIRSF EngD 1 198 IPR004396 GO:0005524(InterPro)|GO:0005525(InterPro)|GO:0016887(InterPro)
Cone6ag0279 333 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 3 91 IPR031167 GO:0005525(InterPro)
Cone6ag0279 333 PANTHER OBG GTPASE FAMILY 2 311 - GO:0005737(PANTHER)|GO:0016887(PANTHER)
Cone6ag0279 333 SUPERFAMILY TGS-like 255 323 IPR012676 -
Cone6ag0279 333 Pfam Protein of unknown function (DUF933) 255 314 IPR013029 -
Cone6ag0279 333 PRINTS GTP1/OBG GTP-binding protein family signature 27 45 IPR006073 GO:0005525(InterPro)
Cone6ag0279 333 PRINTS GTP1/OBG GTP-binding protein family signature 5 25 IPR006073 GO:0005525(InterPro)
Cone6ag0279 333 PRINTS GTP1/OBG GTP-binding protein family signature 71 86 IPR006073 GO:0005525(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0279 K19788 - - vvi:100262744 440.654
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0279 Cone-Chr6:1292228 Cone9ag0315 Cone-Chr9:1372487 1.15E-135 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g990 . . . . . . . . . . Cma01g01304 Cma09g00739 Car01g01111 Car09g00649 . . Cpe02g00628 . . . . . . . Cla11g01598 Cam11g1664 Cec11g1693 Cco11g1689 Clacu11g1822 Cmu11g1634 Cre11g2050 Cone6ag0279 Cone9ag0315 . . Lsi04g01876 . . Cme07g00745 . . . . . . . . . Cmo01g01359 Cmo09g00731 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004300 2 4 0 0 1 0 1 0 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 7 4 1 40