Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cone6ag0287	ATGGCAATGGATTCAGCTTTGAGAGTTCAGAGCTGTTGTTCTAGTCTCTGCTCGAGTTTCAGAACTATGACACAATCATGTACGCCACAACGAACTTTATCTTGCTGTTCTTCTACAAATTATTCTCTTCAGTTCCGCCGTTCTGGTTATCGGCCCTTCGCTAATTTACAGTCTTGCGCTGCTAAACGAGTAAAGAAGGTTCATTGCGAGCTCGAAGGAAAAGTTAATGGAGCTTTATCTGGTGATTTCGATCCTCGCTTCCTTGACCGGCAAAAGGCATTGGAAGCAGCAATGAATGACATAAATAGCTCATTTGGAAAGGGAAGTGTTACCAGATTGGGAAGTCTTGGTGGAGCGTTAGTGGAAACTTTTCCCAGTGGCTGCTTGACATTAGATTTTGCCTTAGGTGGTGGCCTCCCCAAAGGTAGAATTGTGGAGATATTTGGACCAGAAAGTAGTGGAAAGACTACCATAGCATTGCACGCAATTGCAGAAGTCCAGAAACTAGGAGGCAATGCAATGCTTGTAGATGCAGAGCATGCTTTTGATCCATCGTATTCAAAAGCTGTGGGAGTGGATGTAGAAAACTTGATTGTCTGCCAACCCGATCATGGAGAAATGGCACTTGAGATTGCAGATCGAATGTGCAGATCCGGTGCCATAGATCTCATATGTGTTGATTCTGTTTCAGCCCTCACTCCACGAGCAGAAATTGAAGGTGAGATTGGAATGCAACAAATGGGTTTGCAAGCGCGCCTTATGAGCCAAGCTCTGCGTAAAATGTCCGGAAATGCTTCCAAAGCTGGTTGCACTCTTATTTTTTTAAATCAAATAAGATATAAGATTGGTGTATACTATGGTAATCCAGAAGTGACTAGTGGAGGAATTGCATTGAAGTTCTTTGCCTCAGTACGACTAGAAATACGGTCTATAGGGAAGATAAAATCTACCAAAGGAGATGAAGAAATTGGGATCCGAGTTCGTGTAAGAGTACAAAAGAGTAAGGTCTCGAGGCCATACAAACAAGCTGAGTTTGAAATTATCTTTGGAGAAGGAGTGGGTAAACTGGGCTGCATCTTAGATTGTGCTGAACAGATGGATGTTGTGTTAAAGAAGGGATCTTGGTATAGTTATGGGGACCACAGATTGGGCCAGGGACGGGACAGAGCATTACAGTTCTTGAGAGAGGACCCTGCTCTTCTTGATGAAATAGAAAAGGTGGTGAGAACCAAGATGGCAGATGGAACTGGACAAGCCGGGTTTCAATCTGTGAGGAACTGGCCATTAGGCACTGAAGATGATGTACTTGAAGAAATTCGATGA	1323	43.61	MAMDSALRVQSCCSSLCSSFRTMTQSCTPQRTLSCCSSTNYSLQFRRSGYRPFANLQSCAAKRVKKVHCELEGKVNGALSGDFDPRFLDRQKALEAAMNDINSSFGKGSVTRLGSLGGALVETFPSGCLTLDFALGGGLPKGRIVEIFGPESSGKTTIALHAIAEVQKLGGNAMLVDAEHAFDPSYSKAVGVDVENLIVCQPDHGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSIGKIKSTKGDEEIGIRVRVRVQKSKVSRPYKQAEFEIIFGEGVGKLGCILDCAEQMDVVLKKGSWYSYGDHRLGQGRDRALQFLREDPALLDEIEKVVRTKMADGTGQAGFQSVRNWPLGTEDDVLEEIR	440

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
6	1323600	1327692	+	Conep06aG0028900.1	Cone6ag0287	439171

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cone6ag0287	440	Pfam	RecA C-terminal domain	357	412	IPR049261	-
Cone6ag0287	440	FunFam	DNA repair protein recA 1 like	119	414	-	-
Cone6ag0287	440	CDD	RecA	121	355	-	-
Cone6ag0287	440	SUPERFAMILY	RecA protein, C-terminal domain	355	411	IPR023400	-
Cone6ag0287	440	PANTHER	RECA	75	419	IPR013765	GO:0003697(InterPro)\|GO:0005524(InterPro)\|GO:0006281(InterPro)
Cone6ag0287	440	SMART	AAA_5	141	312	IPR003593	GO:0016887(InterPro)
Cone6ag0287	440	PRINTS	RecA protein signature	177	206	IPR013765	GO:0003697(InterPro)\|GO:0005524(InterPro)\|GO:0006281(InterPro)
Cone6ag0287	440	PRINTS	RecA protein signature	294	322	IPR013765	GO:0003697(InterPro)\|GO:0005524(InterPro)\|GO:0006281(InterPro)
Cone6ag0287	440	PRINTS	RecA protein signature	383	400	IPR013765	GO:0003697(InterPro)\|GO:0005524(InterPro)\|GO:0006281(InterPro)
Cone6ag0287	440	PRINTS	RecA protein signature	211	240	IPR013765	GO:0003697(InterPro)\|GO:0005524(InterPro)\|GO:0006281(InterPro)
Cone6ag0287	440	PRINTS	RecA protein signature	249	278	IPR013765	GO:0003697(InterPro)\|GO:0005524(InterPro)\|GO:0006281(InterPro)
Cone6ag0287	440	PRINTS	RecA protein signature	329	358	IPR013765	GO:0003697(InterPro)\|GO:0005524(InterPro)\|GO:0006281(InterPro)
Cone6ag0287	440	Gene3D	-	119	417	IPR027417	-
Cone6ag0287	440	ProSiteProfiles	RecA family profile 1.	120	278	IPR020588	GO:0003677(InterPro)\|GO:0005524(InterPro)\|GO:0006281(InterPro)\|GO:0140664(InterPro)
Cone6ag0287	440	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	90	353	IPR027417	-
Cone6ag0287	440	Hamap	Protein RecA [recA].	90	415	IPR013765	GO:0003697(InterPro)\|GO:0005524(InterPro)\|GO:0006281(InterPro)
Cone6ag0287	440	ProSitePatterns	recA signature.	297	305	IPR020584	GO:0003677(InterPro)\|GO:0005524(InterPro)\|GO:0006259(InterPro)\|GO:0008094(InterPro)
Cone6ag0287	440	Pfam	recA bacterial DNA recombination protein	92	353	IPR049428	-
Cone6ag0287	440	NCBIfam	recombinase RecA	89	409	IPR013765	GO:0003697(InterPro)\|GO:0005524(InterPro)\|GO:0006281(InterPro)
Cone6ag0287	440	ProSiteProfiles	RecA family profile 2.	283	358	IPR020587	GO:0003677(InterPro)\|GO:0005524(InterPro)\|GO:0006259(InterPro)\|GO:0008094(InterPro)

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cone6ag0287	K03553	-	-	mdm:103444240	660.218

Dupl-types

Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
Cone13ag0588	Cone-Chr13:6108066	Cone6ag0287	Cone-Chr6:1323600	4.70E-65	dispersed
Cone6ag0287	Cone-Chr6:1323600	Cone7ag1123	Cone-Chr7:8442880	3.09E-93	dispersed
Cone6ag0287	Cone-Chr6:1323600	Cone9ag0322	Cone-Chr9:1400858	9.48E-271	wgd

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi19g966	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Cla11g01587	Cam11g1654	Cec11g1682	Cco11g1679	Clacu11g1811	Cmu11g1625	Cre11g2041	Cone6ag0287	Cone9ag0322	.	.	Lsi04g01865	.	.	Cme07g00767	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0009642	1	2	1	1	1	0	1	1	0	1	1	1	1	1	1	1	1	2	1	1	1	1	1	0	2	1	1	2	1	1	31