Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0292 ATGGGCACCTCTCAAGCGTTGTGGCTTTTTCATATTCTTTTCATTTGTATAATAATAAAGAAATGCAGCAGTCTCAGTGCTGATGGTGAAGCACTTTTAGGTTTTAGGACATTGGTTGTTAGTTCCCATAGTGTCCTTCTTCAATGGAGACCAGAGGATCCTGACCCATGTAGTTGGAAAGGAGTGACATGTGACACAAAAACCAAGAGAGTAGTATCCTTGAATCTTTCATATCAGAGACTTAGTGGATCTATATCGCCAGACCTTGGGAAGCTAGGGCAACTGACGACTTTAGAACTTCATAACAACAACTTCTACGGGACACTTCCATCAGAATTGGGAAATTGCTTGCTGTTGCAGGGATTATTTCTACAGGGTAATTACTTGAGTGGAACGATCCCCCAAGAACTGGGTAATCTTTCAGAGCTTGAAAATCTAGATATTTCAAGCAACTCACTCGGTGGAAATATCCCATCATCACTAGGGAAGTTGAATAAGCTCGTCACTTTCAATGTATCAAGCAACTTTCTGGTTGGACAAATACCAACTGATGGTGTGCTTATCAAGTTTTCTGAAAGCTCCTTTGATGGAAACCGTGGTTTGTGTGGGAAGCAAATCAGTGTGACATGTAAGGACACTGGAGTACCTGGAACGGATTCCCAGTCACCCAACTCAGGGCAAAATCAAGGTGGAAGGAAAAACTCGGGTCGGCTATTTACCAGTGCATCAGCAACTGTGGGTGCACTACTTCTGGTTGCACTTATGTGTTTCTGGGGTTGCTTTCTGTATAAGAAGTTTGGCAAAAATGACAGTAAAGGTCTAGCAATGGATGTTTGTGGAGGTGCATCAGTAGTAATGTTTCATGGAGACTTACCCTACTCTTCAAAAGACATCATTAAAAAGCTGGAAACTTTGAATGAAGAACACATAATAGGTTGTGGGGGCTTTGGAACAGTTTACAGACTTGCAATGGATGATGGCAATGTCTTTGCCTTGAAAAGAACTGTAAAGGTGAATGAGGGGTTTGATCGTTCTTTTGAAAGAGAGCTATTGATTCTTGGGAGCTTAAAACATCGCTACTTGGTCAATTTACGAGGATATTGCAATTCTCCTACATCAAAACTATTAATTTATGATTTCCTACCTGGTGGTAGCCTTGATGAGGCCCTTCATGAGAGATCAGAGCAACTTGACTGGGATGCACGTCTGAATATTATCATGGGAGCAGCAAAAGGGCTGGCATACTTGCATCATGATTGTTCACCGAGGGTCATACATCGAGACATAAAGTCAAGCAACATTTTGCTTGATGGCAATCTGGAGGCTCGAGTTTCTGACTTTGGACTTGCCAAAGTTTTGGAAGATGAAGAATCTCATATCACAACCATTGTTGCTGGAACATTTGGCTACCTGGCTCCTGAGTATATGCAGAGTGGCAGAGCAACTGAAAAGACAGATGTGTACAGTTTTGGGGTTCTAGTTCTTGAAGTTATAAGCGGAAAACGACCTACTGATGCATCCTTCATCGAGAAGGGCCTCAACATTGTCGGTTGGTTAAACTTTCTGGTCACTGAGAACAGAGAAAGAGATATCATTGATCCACATTGTGAACGGGTGGAGGAAGAAAGCATTGATGCCTTGCTCTCTATAGCCATACAGTGTGTTTCTTCTAGTCCTGACGAAAGACCAACCATGCATCGGGTTATCCAGATACTGGAATCGGAGGTTATGACACAATGCCTTAGTGACTTGTGCGGTTCCAGCTCAGACTGA 1773 42.58 MGTSQALWLFHILFICIIIKKCSSLSADGEALLGFRTLVVSSHSVLLQWRPEDPDPCSWKGVTCDTKTKRVVSLNLSYQRLSGSISPDLGKLGQLTTLELHNNNFYGTLPSELGNCLLLQGLFLQGNYLSGTIPQELGNLSELENLDISSNSLGGNIPSSLGKLNKLVTFNVSSNFLVGQIPTDGVLIKFSESSFDGNRGLCGKQISVTCKDTGVPGTDSQSPNSGQNQGGRKNSGRLFTSASATVGALLLVALMCFWGCFLYKKFGKNDSKGLAMDVCGGASVVMFHGDLPYSSKDIIKKLETLNEEHIIGCGGFGTVYRLAMDDGNVFALKRTVKVNEGFDRSFERELLILGSLKHRYLVNLRGYCNSPTSKLLIYDFLPGGSLDEALHERSEQLDWDARLNIIMGAAKGLAYLHHDCSPRVIHRDIKSSNILLDGNLEARVSDFGLAKVLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVISGKRPTDASFIEKGLNIVGWLNFLVTENRERDIIDPHCERVEEESIDALLSIAIQCVSSSPDERPTMHRVIQILESEVMTQCLSDLCGSSSD 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1342560 1347597 + Conep06aG0029400.1 Cone6ag0292 439176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0292 590 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524(InterPro)
Cone6ag0292 590 Pfam Leucine Rich Repeat 143 164 IPR001611 GO:0005515(InterPro)
Cone6ag0292 590 Pfam Leucine Rich Repeat 119 140 IPR001611 GO:0005515(InterPro)
Cone6ag0292 590 Pfam Leucine Rich Repeat 94 116 IPR001611 GO:0005515(InterPro)
Cone6ag0292 590 Gene3D Transferase(Phosphotransferase) domain 1 381 583 - -
Cone6ag0292 590 ProSiteProfiles Protein kinase domain profile. 305 577 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0292 590 MobiDBLite consensus disorder prediction 213 234 - -
Cone6ag0292 590 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 187 - -
Cone6ag0292 590 Gene3D Phosphorylase Kinase; domain 1 281 380 - -
Cone6ag0292 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag0292 590 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 279 380 - -
Cone6ag0292 590 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 73 167 IPR050647 -
Cone6ag0292 590 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Cone6ag0292 590 Pfam Protein kinase domain 307 570 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0292 590 Gene3D Ribonuclease Inhibitor 25 212 IPR032675 -
Cone6ag0292 590 SUPERFAMILY Protein kinase-like (PK-like) 291 572 IPR011009 -
Cone6ag0292 590 SUPERFAMILY L domain-like 23 184 - -
Cone6ag0292 590 SMART serkin_6 305 577 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0292 590 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 381 584 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0292 Cone-Chr6:1342560 Cone6ag0874 Cone-Chr6:4465526 2.21E-279 dispersed
Cone6ag0292 Cone-Chr6:1342560 Cone9ag0327 Cone-Chr9:1427234 0 wgd
Cone6ag0292 Cone-Chr6:1342560 Cone9ag0368 Cone-Chr9:1634768 5.40E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82910 PF14547 Hydrophob_seed 3.30E-28 CL0482 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0292 - - - 0.0