Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0294 ATGAGGATCTACATCCACTATATAGCACTGTCAATTCTTGTCCTTTCACTTCCATTATCAAACTGTGTTGCTTCTAATCTTGAATTATGGTGCAGCAAAACACCATATCCGCAGCCCTGTCTCTACTTCATGGTTCGAAAATCCCAATCTTCTTCAATGAAACATAAATTTGAGTTCAAAAAGATGACCCTGCAAATTGCACTAGAGCAAGCCTTTAAACTCCAAGCTCAAAGCAAAAAATGGTGTCATGGTTCGAAAATCGTAACTAGCAATGAGAAAGCTGCCTGGTCTGACTGCCGTGAGCTCTACCAGGATTCCATATTCAGACTCAACAACACCAACACCCATTATGCTCAAATTACAGAAGACGACATCCAGACATGGCTTACCTCAGCCATTACAAATCTGGAGACATGTCATGCGGGTTTTGTGGAGCTCGGGGTCCACAGAAGTGTCACTCCCACTATGAATATATTACCCGAGCTAATCATCAATGCACTTGCTGTCAACCAAAATGGGCTTCACCACCGGCCAGAAGAAGAAAATGAGCTTCCTGTTATCCATCATGGCTTTAATCAACAGGTTTTGGAGTCTTCTAATCCCACCTCAGTGGCTAATATTGTGGTGGCTCAAGATGGGTCCGGAAATTTTTCAACCATTCAAGAGGCAGTGAATTTTGCAAGCAAGAGGGAGGGAAGTGGTAGTGATAAGTTTGTTGTGTATGTGAAGGAAGGCAGTTATAGTGAGAATGTTGAGATAGGGCGAGAGGGGAAGAATATTTTCATGGTTGGTGATGGAATTGGGAAGACGATAATTACAGGAAATAGAAGCCTTCATAGTGGCTTCTCTACTTTCAACTCTGCTACAATTGCAATTAGTGGTGACGGATTCATAGCCCGTGAAATAACATTCCGCAACACAGCTGGACCTTCAGGTGGTCAAGCGGTGGCTGTAAGATCAGGATCAGACTTCTCAGTATTCTACCGATGCGGTATTGAGGGATATCAAGATACCCTCTACGTTCATTCAAGTAGACAATTTTTCAGAGAATGCAATATATATGGGACTATAGACTTCATCTTTGGAAATGCAGCTGTTGTTTTTCAGAATTGCAGCATCTATGTAAGGGACTCCTTCCATAAAACCAGTACAATCACAGCTCAAGGTCGAAGTAATCCAAGTCAAAAGTCTGGAATAGTTATTCAAAATTCGAAAGTAACTTCTATGTCAGAGGAAAGCAATGAGAAAAGCTCAATGAAGACATACCTGGGAAGGCCATTGGGGAATTATTCGCAGACAGTGTTCATCAAGACTTTTCTTGATGATTTAATAGACCCTTCAGGTTGGGCAAATTGGGGTGATGATTCCGTTCTTAATACTCTTTACTATGGAGAATATGATAACGAAGGCCCTGGTTCTTCAACTGCAAGCAGAGTTAAATGGGATGGTTACCATGTCATTACAAATTCAACCGATGCATTAAAGTACTCTTTGAGCAATTTCATAGATGGCGATTCTTGGTTGCCATCACTTAATGTGCCCTTCAGACCAGGGCTTTAA 1560 41.67 MRIYIHYIALSILVLSLPLSNCVASNLELWCSKTPYPQPCLYFMVRKSQSSSMKHKFEFKKMTLQIALEQAFKLQAQSKKWCHGSKIVTSNEKAAWSDCRELYQDSIFRLNNTNTHYAQITEDDIQTWLTSAITNLETCHAGFVELGVHRSVTPTMNILPELIINALAVNQNGLHHRPEEENELPVIHHGFNQQVLESSNPTSVANIVVAQDGSGNFSTIQEAVNFASKREGSGSDKFVVYVKEGSYSENVEIGREGKNIFMVGDGIGKTIITGNRSLHSGFSTFNSATIAISGDGFIAREITFRNTAGPSGGQAVAVRSGSDFSVFYRCGIEGYQDTLYVHSSRQFFRECNIYGTIDFIFGNAAVVFQNCSIYVRDSFHKTSTITAQGRSNPSQKSGIVIQNSKVTSMSEESNEKSSMKTYLGRPLGNYSQTVFIKTFLDDLIDPSGWANWGDDSVLNTLYYGEYDNEGPGSSTASRVKWDGYHVITNSTDALKYSLSNFIDGDSWLPSLNVPFRPGL 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1354882 1356620 + Conep06aG0029600.1 Cone6ag0294 439178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0294 519 CDD PMEI-like_3 29 172 - -
Cone6ag0294 519 SMART PMEI_2 22 169 IPR006501 GO:0004857(InterPro)
Cone6ag0294 519 Pfam Pectinesterase 206 505 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone6ag0294 519 PANTHER PECTINESTERASE 9 510 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone6ag0294 519 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 172 IPR035513 -
Cone6ag0294 519 Gene3D - 201 519 IPR012334 -
Cone6ag0294 519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 171 IPR035513 -
Cone6ag0294 519 SUPERFAMILY Pectin lyase-like 203 517 IPR011050 -
Cone6ag0294 519 FunFam Pectinesterase 200 519 - -
Cone6ag0294 519 NCBIfam pectinesterase inhibitor domain 3 171 IPR006501 GO:0004857(InterPro)
Cone6ag0294 519 ProSitePatterns Pectinesterase signature 2. 353 362 IPR033131 -
Cone6ag0294 519 Pfam Plant invertase/pectin methylesterase inhibitor 27 169 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0802 Cone-Chr5:3450694 Cone6ag0294 Cone-Chr6:1354882 2.49E-180 dispersed
Cone6ag0294 Cone-Chr6:1354882 Cone6ag0383 Cone-Chr6:1864724 1.27E-139 dispersed
Cone6ag0294 Cone-Chr6:1354882 Cone4ag0484 Cone-Chr4:2157022 7.85E-183 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0294 K01051 - vvi:100255703 563.533