Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0332 ATGGAGAGCAACCTCGTACTCTTTCGTCTTGCTTTGACACTCCTCTTGTTGATCAGCTTCCTGCCTGTTTCAAAAGCCAAACAAGTACAGGTTCGATCAATCAAAACCGATGCGGAAGCCCTTCTCATGTTAAAGAAGAAGATTACTAAGGATCCAAGCGGAGTCTTATCAAATTGGGAGCTAGCCAAAAATCCATGCACCTGGTATGGAGTTACATGCTCTTCGGAATCGCGAGCAATTCATCTCGATCTTAGTGCTTCTAGTCTCGAAGGAGATATCTCCCTTGACCCCTTATCTTCTCTTGACATGCTATCTGTCTTGAAACTATCTACTAATTCTTTCACAATAAATTCGACCGAATTGCTTCGCCTCCCATATAATTTGCAATATCTCGATCTATCCCTTTCCGGAGTTATAGGCCTTGTTCCGGAAACTCTCTTCTATAGGCTTCCAAATCTTCTTACTTCCAATCTTGCCTTCAACAACATAACCGGCTCATTACCCGAAAATCTGTTTTTGAATCCGAATAAGGTTCAAGAATTTGACCTCTCTTTTAACAACCTATCTGGATCGATTTCGGGTTTAAGGCTATACACCAATTCTTGCAAATCATTGATGAGTCTAGATCTTTCTGGAAACCGTCTAACCGGTTTTATCCCACCTTCCGTTTCGAATTGCACGGCTCTCCAAGCATTGAGTTTAACGACTAATTTTCTCTCCGGTGAAATCCCAGACACTTTAGGAGACCTCAAGAGTTTACAAACATTGGATCTTTCTAACAATCAACTAAGTGGTTGGATCCCTTCTGAATGGGAAAATACTTGCAATTCGCTTCAAGAACTTAAGCTTTACCGTAACAACATCTCGGGTCCGATCCCGGCCTCTTTCTCCTCATGTACTTGGTTACAAGTCATTGATCTTTCTAACAATAATATTTCAGGTCCATTACCCGATTCGGTCTTTAAGAACCTTATCTCCCTGGAAAGCTTGATTTTAAGCAACAACATTATTTCCGGACCCTTCCCTTCTTCCATATCATCCTGCAAGAAACTAAAGGTTGTAGATTTAAGCTCCAATAAAATATCCGGCAAAATCCCAGAAAGTCTATGTCCTGGAACTGCATCGCTAGAGGAGCTTAGAATGCCGGACAATGTCATCACAGGAGTGATCCCTCCTCAGCTTTCACTCTGTCCTCAATTGAAGACAATTGATCTTAGCTTGAATTATCTGAACGGCTCGATCCCAGCTGAGCTTGGGAAGCTTCAGAATCTAGAGCAGCTCATAGCATGGTTCAACGGGTTGGAAGGAAAAATCCCCCCCGAGTTGGGATCGTGCAAGAGTTTAAAGGATCTAATTCTTAACAATAATCAGTTAAGTGGCGGAATCCCGAGTGAATTGTTCAACTGTAGCAATCTTGAATGGATTTCGCTAACGAGCAACGGACTCAATGGAGAAATCCCAAGGGAGTTTGGAGTTTTGACGAGACTGGCCGTTCTACAACTTGGGAACAATAGCTTGAGTGGTCAGATTCCGGGCGAGCTAGCAAACTGCAGCAGTTTGGTCTGGTTGGATTTGAATAGCAACCATCTTATGGGAGAGATCCCGCCTCGACTTGGGAGACAGATTGGGGCGAAATCATTGAATGGGATTCTGGCGGGAAACACTTTGGTCTTTGTTCGGAATGTCGGGAACTCGTGTAAAGGAATCGGAGGGTTATTGGAATTTGCAGGGATTCGGCCCGACAGACTACAACAGATTCCGACTTTGAAGAGCTGCGATTTTACGAGAATGTACTCGGGTGCGGTTTTGAGCCTCTTTACGAAATACCAAACGTTGGAGTATCTTGATCTTTCTTACAACGAGCTTCGTGGGAGGATTCCAGAAGAAATGGGTGACATGGTGGCCTTGCAAGTTCTAGAGCTTTCTCACAACCAACTTTCCGGAGAGATCCCCTCCTCGCTCGGGAATCTAAAAAACTTGGGCGTGTTCGATGCGTCGCATAACAGATTACAGGGACATATCCCAGATTCATTTTCAATGCTATCGTTTTTGGTGCAAATCGATTTATCGAGCAATGAATTAACGGGGGAAATTCCACAAAGAGGACAGCTCAGCACTCTTCCGGCGAGCCAATATGCAAACAATCCGGGACTTTGCGGAGTTCCGTTGCCAGAATGCCGGAATGAATACAACCCTGGAACGAATCCGAGCGAAAATTCAGGTAGAGGAAGGAAGAAGTCAGAAGCTGCTTCGTATGCTAATAGCATTATCCTAGGGGTCCTAATATCTATAGCTTGTATTTGTATACTGATCGTATGGGCGATTGCAATGCGAGCTAGGAGAAAGGAGGCACAAGAGGTCAAGATTCTTAACAGCTTGCAAGCATCCCATGCAGCTACAACATGGAAAATCGACAAAGAAAAAGAACCACTTAGCATCAATGTAGCTACTTTTCAAAGGCAGCTTCGAAAGCTCAAGTTTTCTCAACTAATCGAAGCTACTAACGGCTTCTCAGCCCAAAGCCTTATAGGGTCTGGAGGGTTCGGAGAAGTTTTCCGGGCCACATTGAAAGACGGGTCGTCTGTCGCGATAAAGAAGCTGATAAGACTAAGTTGTCAAGGGGATAGAGAATTCATGGCCGAAATGGAAACTCTAGGGAAGATCAAACATAGAAACCTAGTACCCTTATTGGGTTATTGCAAGGTAGGCGAGGAACGCTTGCTCGTGTATGAATTCATGGAGTATGGAAGCCTTGAAGAGATGCTTCATGGAAGAACGAAAACACAGGAAAGGCGGGTCCTAACATGGGAAGAGAGGAAGAAGATTGCAAGAGGGGCAGCTAAAGGACTATGCTTCTTACACCACAATTGCATACCTCATATCATACATAGGGACATGAAGTCAAGCAATGTACTACTAGACAATGAAATGGAGGCACGAGTTTCGGATTTCGGAATGGCACGGCTCATAAGTGCACTAGACACTCATCTTAGTGTGAGCACTCTTGCAGGCACTCCTGGCTACGTCCCGCCTGAGTATTACCAAAGCTTCAGGTGCACGGCAAAAGGTGATGTTTATTCATGTGGGGTGGTGCTCCTTGAACTTTTGACAGGGAAGCGGCCGACTGATAAGGAGGATTTTGGGGATACTAATTTGGTGGGGTGGGTGAAAATGAAGGTGAGGGAAGGAAAGCAGATGGAAGTGATCGATCCAGATTTGATATCGGTGAAGAAAGGAACCGATGAGGCAGAGGCAGAGGAGGTTAAGGAGATGGTGAGGTATTTGGAGATTAGTTTACAATGTGTGGAGGATTTTCCTTCTAGAAGGCCTAATATGTTGCAGGTGGTGGCGATGTTGAGAGAACTTATGCCGGGATCGGGCAATGGGACCAGCAATAGCACTTGA 3405 44.73 MESNLVLFRLALTLLLLISFLPVSKAKQVQVRSIKTDAEALLMLKKKITKDPSGVLSNWELAKNPCTWYGVTCSSESRAIHLDLSASSLEGDISLDPLSSLDMLSVLKLSTNSFTINSTELLRLPYNLQYLDLSLSGVIGLVPETLFYRLPNLLTSNLAFNNITGSLPENLFLNPNKVQEFDLSFNNLSGSISGLRLYTNSCKSLMSLDLSGNRLTGFIPPSVSNCTALQALSLTTNFLSGEIPDTLGDLKSLQTLDLSNNQLSGWIPSEWENTCNSLQELKLYRNNISGPIPASFSSCTWLQVIDLSNNNISGPLPDSVFKNLISLESLILSNNIISGPFPSSISSCKKLKVVDLSSNKISGKIPESLCPGTASLEELRMPDNVITGVIPPQLSLCPQLKTIDLSLNYLNGSIPAELGKLQNLEQLIAWFNGLEGKIPPELGSCKSLKDLILNNNQLSGGIPSELFNCSNLEWISLTSNGLNGEIPREFGVLTRLAVLQLGNNSLSGQIPGELANCSSLVWLDLNSNHLMGEIPPRLGRQIGAKSLNGILAGNTLVFVRNVGNSCKGIGGLLEFAGIRPDRLQQIPTLKSCDFTRMYSGAVLSLFTKYQTLEYLDLSYNELRGRIPEEMGDMVALQVLELSHNQLSGEIPSSLGNLKNLGVFDASHNRLQGHIPDSFSMLSFLVQIDLSSNELTGEIPQRGQLSTLPASQYANNPGLCGVPLPECRNEYNPGTNPSENSGRGRKKSEAASYANSIILGVLISIACICILIVWAIAMRARRKEAQEVKILNSLQASHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAQSLIGSGGFGEVFRATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEFMEYGSLEEMLHGRTKTQERRVLTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDNEMEARVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSCGVVLLELLTGKRPTDKEDFGDTNLVGWVKMKVREGKQMEVIDPDLISVKKGTDEAEAEEVKEMVRYLEISLQCVEDFPSRRPNMLQVVAMLRELMPGSGNGTSNST 1134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1569748 1573178 + Conep06aG0033800.1 Cone6ag0332 439216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0332 1134 SUPERFAMILY RNI-like 207 537 - -
Cone6ag0332 1134 FunFam Leucine-rich repeat receptor protein kinase EMS1 463 558 - -
Cone6ag0332 1134 SUPERFAMILY Protein kinase-like (PK-like) 818 1119 IPR011009 -
Cone6ag0332 1134 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 198 275 - -
Cone6ag0332 1134 Pfam Brassinosteroid receptor island domain 548 606 IPR045381 -
Cone6ag0332 1134 Gene3D Phosphorylase Kinase; domain 1 796 912 - -
Cone6ag0332 1134 Gene3D Ribonuclease Inhibitor 175 726 IPR032675 -
Cone6ag0332 1134 FunFam serine/threonine-protein kinase BRI1-like 2 913 1130 - -
Cone6ag0332 1134 Pfam Protein kinase domain 839 1050 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0332 1134 SMART serkin_6 837 1123 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0332 1134 FunFam serine/threonine-protein kinase BRI1-like 2 798 912 - -
Cone6ag0332 1134 SUPERFAMILY L domain-like 59 273 - -
Cone6ag0332 1134 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 573 730 - -
Cone6ag0332 1134 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 580 1122 IPR050647 -
Cone6ag0332 1134 CDD STKc_IRAK 843 1122 - -
Cone6ag0332 1134 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 276 365 - -
Cone6ag0332 1134 Gene3D - 551 607 - -
Cone6ag0332 1134 PRINTS Leucine-rich repeat signature 205 218 - -
Cone6ag0332 1134 PRINTS Leucine-rich repeat signature 250 263 - -
Cone6ag0332 1134 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Cone6ag0332 1134 ProSiteProfiles Protein kinase domain profile. 837 1123 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0332 1134 FunFam serine/threonine-protein kinase BRI1-like 2 36 148 - -
Cone6ag0332 1134 ProSitePatterns Serine/Threonine protein kinases active-site signature. 961 973 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag0332 1134 ProSitePatterns Protein kinases ATP-binding region signature. 843 866 IPR017441 GO:0005524(InterPro)
Cone6ag0332 1134 Gene3D Transferase(Phosphotransferase) domain 1 913 1129 - -
Cone6ag0332 1134 SMART LRR_typ_2 493 517 IPR003591 -
Cone6ag0332 1134 SMART LRR_typ_2 446 469 IPR003591 -
Cone6ag0332 1134 SMART LRR_typ_2 250 273 IPR003591 -
Cone6ag0332 1134 SMART LRR_typ_2 633 657 IPR003591 -
Cone6ag0332 1134 SMART LRR_typ_2 150 174 IPR003591 -
Cone6ag0332 1134 SMART LRR_typ_2 202 226 IPR003591 -
Cone6ag0332 1134 SMART LRR_typ_2 421 445 IPR003591 -
Cone6ag0332 1134 SMART LRR_typ_2 302 323 IPR003591 -
Cone6ag0332 1134 SMART LRR_typ_2 324 348 IPR003591 -
Cone6ag0332 1134 SMART LRR_typ_2 518 541 IPR003591 -
Cone6ag0332 1134 SUPERFAMILY L domain-like 576 723 - -
Cone6ag0332 1134 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 366 462 - -
Cone6ag0332 1134 Pfam Leucine rich repeat 605 646 IPR001611 GO:0005515(InterPro)
Cone6ag0332 1134 Pfam Leucine rich repeat 204 263 IPR001611 GO:0005515(InterPro)
Cone6ag0332 1134 Pfam Leucine rich repeat 302 361 IPR001611 GO:0005515(InterPro)
Cone6ag0332 1134 Gene3D Ribonuclease Inhibitor 36 148 IPR032675 -
Cone6ag0332 1134 Pfam Leucine Rich Repeat 277 299 IPR001611 GO:0005515(InterPro)
Cone6ag0332 1134 Pfam Leucine Rich Repeat 496 517 IPR001611 GO:0005515(InterPro)
Cone6ag0332 1134 Pfam Leucine Rich Repeat 471 492 IPR001611 GO:0005515(InterPro)
Cone6ag0332 1134 Pfam Leucine Rich Repeat 447 469 IPR001611 GO:0005515(InterPro)
Cone6ag0332 1134 Pfam Leucine Rich Repeat 519 539 IPR001611 GO:0005515(InterPro)
Cone6ag0332 1134 Pfam Leucine Rich Repeat 399 421 IPR001611 GO:0005515(InterPro)
Cone6ag0332 1134 ProSiteProfiles Leucine-rich repeat profile. 252 273 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0332 Cone-Chr6:1569748 Cone6ag1315 Cone-Chr6:10561015 5.84E-162 dispersed
Cone6ag0332 Cone-Chr6:1569748 Cone9ag0368 Cone-Chr9:1634768 0 wgd
Cone6ag0332 Cone-Chr6:1569748 Cone9ag0327 Cone-Chr9:1427234 1.74E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82912 PF00201 UDPGT 2.60E-30 CL0113 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0332 - - - 0.0