Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0340 ATGTTTGGGGAGAGTCTCCCTAATAATAATGGTGAGAGCGAGAACTCCCAGAGCAAGCTCTCAAGGTACGTTTCTGAGCGTAAAAGGGAAAACCCAGATGAGAAAAATAGTTTTTCTGGAAAGGGTATATATTTTCTCAACGAATCGGAGATGGGTTCTGATGGGTTCTTGTCAAACGCGTCAAAAATGAAAAATTCAACCTCTCAGGAGTTGACTCTGAGCTACATGTGCGATAATTCGAGGTTGAATTTTCCCGCGAAAAATTATCCATCTCCAGTTAATAATAATAAAACATTGCTTAATTCATTCGACAAAAAGGGTAAAGAGGTTTTCGTTTCAGAGAAGGATGATAAATGGGTAGAGAGAGATTTCCTCAATTTGAACGAGACTAGAGGGAATTCTTCGAAACGAGAGGTAGAGGAAGAGATTGAGAGAGAGAATCGCGACAAGAAGCCTAAGTTAGGGGCGCTTAATCTCTCTCTAGCTTTGCCTGATATTTCTCTCACTGCTTCAAACGCGTTACAAGATGAAGATCCTCCTCTTCGTTCCAAGCCTAGTAGGAGTATTCAATCCTTAGCTCCATCAAATAATTACACGCAGACCACCTGTTCTAATGATTTCACAGCTGCTACCTTATCCCAATCCTATTCCCACCCCTTTTCGTTTTCTCACAACCCTAGCTGCTCACTTACTAGAAATTCGACTGAGAATTATGATTATTCGGTGGGAAGAGATGACCAGATTTGGAACTGTGGAGAGGGTACTAATGGGTCTGTTCATAGTCGGTTTAAGCCGTTTGGAGATGGGGTTGCTTTGTCTATGATGCAGGCAAGTAATCGCCCGGCAAATAAGGATTTGGTAAATGGTCATCCATTAATTACAAGCTCTGATAACCACTCTCTTTATCCATCTGAGTTGCCTGCCAGGCCAAGACTTGATACACCCTCCGTGGATTTGAAAGGGAAAGGCTCTGATAATTTGAGAGCATTAGAGGGTCCAGCGCATAAGATTTCGAGGCCAGAGAGAATTTTGAGAGAAATTGTTGTTGAATCGATCCCTGTCATGGCTCAGATTGTTCACGAGCTATCCCCTGAAACACTTGCATCAACTAAGGATTATCTGAACAGTGTAATTTCAAACCCTGAGAAAAGAGATGAATTAGCAGCGTTACAAAACAGGCTTGAAAGAAGATCCGATCTTTCTAAAGAAACTCTCTCAAAGTGCAATAAAGACCAGTTAGAAATTCTAGTTGCTGTCAAGTTGGGGCTTGGAACTTTCATTTCGGGCAAAACCCGGCGCGGTGTTGCTGAACTGGTAGAGATTTTCTTGCTCTTGAGATGTAGAAATTGCAATAGTGTAGTCCCTGTTGATGACTGTGATTGCAGAATTTGTTTGGGAAATAAAGGGTTTTGCAGTTCATGTATGTGTCCGATTTGCCTGAATTTTGATTGTGCGAATAATACTTGTAGTTGGGTTGGATGTGATGTGTGTTCACATTGGTGCCATACTGCTTGTGGGATTCAGAGGAATCTGATTAGGCCCGGCCCAAGCTTGAGAGGACCTTCCGGAACAAAGGAGATGCTGTTTAACTGCGTCGCTTGTTCACATGCTTCTGAGATGTTTGGTTTTGTAAGGGATGTTTTCGTTTGCTGTGCAAAGGATTGGGGTCTAAAGACCTTGATGAAGGAGCTGGATTGTGTGACGAGTGTTTTCAGGAGGAGTGAGGATTACAAGGGGAAAGAGCTTTATAAAAAGGTGGATGAGATGCTTTCTAAGCTTGCGAGTAACATGATCTCTCCTTCAAATGCGAGCAATTTCATTATCCAGTTTTTCAATTATGCAGACGGCCTATCTGAATTCCCATCTTCAACCATAACATCAATAGAGTTACCAGCTACAACACAAACCGGCCTCGGAAAAGATCGGGCCCCACTGCCTCAGCAGAACATAAGCTCTTCTAGCACCTGCTGCAATTTACTTTTCACTGATCATCATCAGAACAACAATAAAGTATCATCCATCATAAAAGACATGAAGAAAGAAGATGAGTTCAGGTTTGGGACTTTCTCAAAGAAAGAAGGGCTCGACAGTCTAGAAGGCATTGTTCGAATCAAGGAAGCAGAAGCGAGCATGTTTCAGAACAAGGCTGATGATGCTAGAAGAGAGGCTGAAGGATTACAGAGGATTATAATTGCAAAGACTGAGAAGTTGGAAGAGGAGTATATCGAAAAGCTTAGCAAGCTGGGTTTGCAAGAAACGGAGGAGAGGAGGAGGAAGAAAACGGAGGAGCTCAAGTTCTTGGAGAACTCCCACTTCGACTATTATAACATGAAGATGAGAATGCAAAGCGAGATTGCCGGTTTGTTGGAGAGAATGGAGGCAACTAAAAAGCAGTTAGTATAA 2403 42.41 MFGESLPNNNGESENSQSKLSRYVSERKRENPDEKNSFSGKGIYFLNESEMGSDGFLSNASKMKNSTSQELTLSYMCDNSRLNFPAKNYPSPVNNNKTLLNSFDKKGKEVFVSEKDDKWVERDFLNLNETRGNSSKREVEEEIERENRDKKPKLGALNLSLALPDISLTASNALQDEDPPLRSKPSRSIQSLAPSNNYTQTTCSNDFTAATLSQSYSHPFSFSHNPSCSLTRNSTENYDYSVGRDDQIWNCGEGTNGSVHSRFKPFGDGVALSMMQASNRPANKDLVNGHPLITSSDNHSLYPSELPARPRLDTPSVDLKGKGSDNLRALEGPAHKISRPERILREIVVESIPVMAQIVHELSPETLASTKDYLNSVISNPEKRDELAALQNRLERRSDLSKETLSKCNKDQLEILVAVKLGLGTFISGKTRRGVAELVEIFLLLRCRNCNSVVPVDDCDCRICLGNKGFCSSCMCPICLNFDCANNTCSWVGCDVCSHWCHTACGIQRNLIRPGPSLRGPSGTKEMLFNCVACSHASEMFGFVRDVFVCCAKDWGLKTLMKELDCVTSVFRRSEDYKGKELYKKVDEMLSKLASNMISPSNASNFIIQFFNYADGLSEFPSSTITSIELPATTQTGLGKDRAPLPQQNISSSSTCCNLLFTDHHQNNNKVSSIIKDMKKEDEFRFGTFSKKEGLDSLEGIVRIKEAEASMFQNKADDARREAEGLQRIIIAKTEKLEEEYIEKLSKLGLQETEERRRKKTEELKFLENSHFDYYNMKMRMQSEIAGLLERMEATKKQLV 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1608326 1612492 - Conep06aG0034600.1 Cone6ag0340 439224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0340 800 MobiDBLite consensus disorder prediction 21 36 - -
Cone6ag0340 800 Coils Coil 778 798 - -
Cone6ag0340 800 Coils Coil 750 770 - -
Cone6ag0340 800 MobiDBLite consensus disorder prediction 298 327 - -
Cone6ag0340 800 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 24 799 IPR004082 GO:0005634(PANTHER)|GO:0010071(PANTHER)|GO:0010078(PANTHER)|GO:0010468(PANTHER)|GO:0010492(PANTHER)
Cone6ag0340 800 Pfam PHD - plant homeodomain finger protein 448 568 IPR032881 -
Cone6ag0340 800 CDD PHD_OBE1_like 475 534 IPR047578 -
Cone6ag0340 800 Coils Coil 702 736 - -
Cone6ag0340 800 MobiDBLite consensus disorder prediction 172 197 - -
Cone6ag0340 800 MobiDBLite consensus disorder prediction 1 20 - -
Cone6ag0340 800 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 555 574 IPR004082 -
Cone6ag0340 800 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 735 757 IPR004082 -
Cone6ag0340 800 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 438 459 IPR004082 -
Cone6ag0340 800 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 397 412 IPR004082 -
Cone6ag0340 800 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 412 427 IPR004082 -
Cone6ag0340 800 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 696 716 IPR004082 -
Cone6ag0340 800 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 358 380 IPR004082 -
Cone6ag0340 800 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 482 502 IPR004082 -
Cone6ag0340 800 MobiDBLite consensus disorder prediction 1 40 - -
Cone6ag0340 800 Pfam Coiled-coil region of Oberon 676 789 IPR032535 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0340 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0340 Cone-Chr6:1608326 Cone9ag0374 Cone-Chr9:1674480 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g536 . . . . . Bpe10g01008 Bma14g01925 Bma15g00021 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0340 Cone9ag0374 . Csa05g01962 . . Blo06g01035 . Bda07g01736 . . . . . . . . Cma04g01801 . . . . . . . . . . . . . . . . . . . . . . Cme09g01299
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005873 3 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 39