Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0342 ATGGGTATGAAGGTGCAGCAGCATAGCCATGGCCACCACTCAGTTTCAGTGAGATTAAACGAGCAAATAGGGACCAAAAAAGGGTACACCTTTATTCAATCAAATAGGGCTTGGCTTCCAAAATTCCTTCTTCTGTGGGTCATGGTGGTTGCATTTATCAGCATATCAATCTACAATGGCATGGATGCTGACACTAAAGTGAGAAGGAAAGAAGTTCTAAGCAGCATGTGTGATCAGAGAGCAAGAATGTTACAAGATCAATTCAATGTCAGTGTTAATCATGTCCATGCCCTTGCAATTCTTGTTTCCACCTTCCATTACTTGAAGGACCCATCTGCTATTGATCAGGAGACTTTTGCGGAGTATACGGCCAGAACGGCTTTTGAGCGGCCTCTACTTAGTGGCGTGGCCTATGCACAGAGAGTATTAAATTTGGAAAGGGAAAGCTTTGAGAAGAAACATGGTTGGACCATAAAAACAATGGAGAGGGAGCCCTCCCCTGTCCGAGATGAATATGCACCTGTTATATTTTCTCAAGAAACCGTCTCTTACATCGAGTCTCTTGATATGATGTCAGGGGAGGAGGATAGAGAGAACATTTTGAGGGCAAGTGCTACCGGTAAAGCTGTTCTAACAAGCCCTTTTAGGCTTCTTGGCTCTCATCATCTTGGAGTTGTGTTGACATTTCCTGTTTACAAATACAAACTGTCTCCAAACCCGCCTGTTGAAGAGCGGACTCAAGCGACGGCAGGATATATTGGAGGGGCATTTGATGTAGAGTCTCTTGTGGAGAATTTGCTCGGGCAATTAGCTGGGAACCAAGCTATCTTAGTGAATGTGTATGACATTACAAATTCTTCAGATCCACTTATCATGTATGGTCATGAAAATCAAGAAGGTGACGTGTCTCTTTTGCATGAGAGCAAGCTTGATTTTGGAGATCCATTCAGGAAGCATAAAATGATCTGCAGGTATCATCAGAAGGCACCCACTTCATGGCCTGCTCTGACTATGGCATTCTTATTCTTCGTGATTGGTTTATTACTTGGCTATATCTTATATGGAGCAGCAACTCACATTGTTGAGGTAGAGGATGATTTCCATGAAATGCAGGAACTAAAAGTTCGAGCAGAAGCTGCTGACATAGCAAAATCTCAGTTTCTAGCAACTGTATCGCACGAAATTAGGACCCCCATGAATGGCATACTTGGAATGCTTGCTCTGCTTTTGGATACAGATTTGAGTTCTACTCAGAGGGACTACAGTCAAACTGCACAGGCCTGTGGAAAGGCATTGATAGCATTGATAAATGAGGTGCTTGACAGGGCAAAGATTGAAGCTGGAAAGTTAGAGCTGGAAGCAGTTCCTTTTGATCTTCGGTCCATAGTTGATGATGTTTTATCTTTGTTTTCTGAAAAGTCGAGAAACAAGGGCATAGAGCTGGCAGTTTTTGTTTCGGATAAAGTTCCGGCGATTGTTATGGGAGATCCAGGAAGATTTAGACAGATTATTACAAATCTTGTGGGCAATTCTGTTAAATTCACTGAACGAGGACACATATTTGTCAAAGTTCACGTAGCCGAGCACCCAAAGGCTTTGACTGAAGCGAAACCCAAACCTTGTATGAATGGACGATTAGATGAAGCTCCATTTATAGCACGCGAGTGTAAGTTCAAAACCTTAAGTGGGTTTGAGGCAGCTGATGACCAGAACAGTTGGGATAGCTTCGAGCATTTAACAATGGGGGGAGAAGATTGCTTCCAATCCGACTCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTAACTACCATGAATGTCTGTAATGAATGTTCCGAGCAAGTCACTTTAATGGTCTCTGTTGAAGATACCGGAATTGGGATCCCTTTATGTGCCCAAGATAGAGTTTTCACTCCCTTCATGCAAGCAGACAGCTCTACTTCCAGAAACTATGGAGGAACAGGGATTGGGTTAAGTATTAGTAAGTGTCTGGTTGAGCTGATGGGTGGTCAGATTAACTTCATAAGCCGGCCCCATGTTGGGAGCACATTCTCTTTCACTGCAATTTTCGGGAGGTGCAAGAAGGCGGCTATCAGTGATGTGAAGAAGAAACCCAACTATGAAGACCTCCCTTCTAGTTTTAGAGGACTTAAAGCCATAGTTGTTGATGGAAAACAGATTAGAGCTTCTGTTACTAGATATCATTTGAAGAGACTTGGTATCATTGTTGAAATTGCAAGAAGCATTAAAATGGCCGCCGCTCTATGTGGGAAAAACGGTTCTACCACATCACAAAACATATTTCAACCGGATCTAATTCTAGTCGAGAAGGATACCTGGAGTGGGGTGGAAGATGGTGGTTTAAGTATCCGGAAACTAGACTGGAGACAGAATGGCAACGTGTTCAAGTTACCTAGGATGATCCTTCTAGCAACCAATATCAGCCCTTCCGAATTTGATAAAGCCAAGGCGGCTGGTTTTGAAGACATGGCGATAATGAAACCGCTGAGAGCAAGTATGGTGGCTGCTTGTCTTCAACAAGTGATAGGGACTGGTAAGAAGAGCCAACAGGGAAACGGCTCGACTTTCCTTCAGAGCCTTCTCTGCGGCAAGAAGATACTGGTGGTTGATGACAATATGGTCAACCGGAGAGTTGCAGCCGGTGCCCTCAAGAAATTTGGTGCTGCTGTTGAGTGTGCTGATAGCGGGAAAGCTGCTCTGGCTTTGCTTCAATTGCCACATGGTTTCGATGCTTGCTTCATGGATATTCAAATGCCGGAAATGGATGGGTTTGAAGCGACACGGAGAATACGGCAAATGGAAGACAACGAAAACGAGCAAAAGAATGGAATGGAAGGAAATGGTCAAAAGGGCGAGTGGCATTTACCGATACTAGCAATGACAGCTGACGTAATTCACGCGACATATGATGAGTGCCTCAAATGTGGAATGGATGGATATGTTTCGAAGCCCTTTGAGGAAGAAAATCTCTACCAGGCTGTTGCCAAGTTCTTCAAATCGTAG 3030 43.7 MGMKVQQHSHGHHSVSVRLNEQIGTKKGYTFIQSNRAWLPKFLLLWVMVVAFISISIYNGMDADTKVRRKEVLSSMCDQRARMLQDQFNVSVNHVHALAILVSTFHYLKDPSAIDQETFAEYTARTAFERPLLSGVAYAQRVLNLERESFEKKHGWTIKTMEREPSPVRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRASATGKAVLTSPFRLLGSHHLGVVLTFPVYKYKLSPNPPVEERTQATAGYIGGAFDVESLVENLLGQLAGNQAILVNVYDITNSSDPLIMYGHENQEGDVSLLHESKLDFGDPFRKHKMICRYHQKAPTSWPALTMAFLFFVIGLLLGYILYGAATHIVEVEDDFHEMQELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYSQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSIVDDVLSLFSEKSRNKGIELAVFVSDKVPAIVMGDPGRFRQIITNLVGNSVKFTERGHIFVKVHVAEHPKALTEAKPKPCMNGRLDEAPFIARECKFKTLSGFEAADDQNSWDSFEHLTMGGEDCFQSDSSPSSSSSSSSSSLTTMNVCNECSEQVTLMVSVEDTGIGIPLCAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPHVGSTFSFTAIFGRCKKAAISDVKKKPNYEDLPSSFRGLKAIVVDGKQIRASVTRYHLKRLGIIVEIARSIKMAAALCGKNGSTTSQNIFQPDLILVEKDTWSGVEDGGLSIRKLDWRQNGNVFKLPRMILLATNISPSEFDKAKAAGFEDMAIMKPLRASMVAACLQQVIGTGKKSQQGNGSTFLQSLLCGKKILVVDDNMVNRRVAAGALKKFGAAVECADSGKAALALLQLPHGFDACFMDIQMPEMDGFEATRRIRQMEDNENEQKNGMEGNGQKGEWHLPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQAVAKFFKS 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1622438 1628361 + Conep06aG0034800.1 Cone6ag0342 439226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0342 1009 SMART CHASE_2 110 295 IPR006189 -
Cone6ag0342 1009 ProSiteProfiles Response regulatory domain profile. 874 1007 IPR001789 GO:0000160(InterPro)
Cone6ag0342 1009 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 369 449 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone6ag0342 1009 PRINTS Bacterial sensor protein C-terminal signature 619 633 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone6ag0342 1009 PRINTS Bacterial sensor protein C-terminal signature 654 672 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone6ag0342 1009 PRINTS Bacterial sensor protein C-terminal signature 637 647 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone6ag0342 1009 CDD REC_hyHK_CKI1_RcsC-like 875 1003 - -
Cone6ag0342 1009 Coils Coil 433 453 - -
Cone6ag0342 1009 ProSiteProfiles Response regulatory domain profile. 720 851 IPR001789 GO:0000160(InterPro)
Cone6ag0342 1009 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 456 689 IPR036890 -
Cone6ag0342 1009 SMART HKATPase_4 495 694 IPR003594 -
Cone6ag0342 1009 Pfam CHASE domain 113 293 IPR006189 -
Cone6ag0342 1009 Gene3D - 61 113 - -
Cone6ag0342 1009 SMART HisKA_10 383 448 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone6ag0342 1009 Pfam Response regulator receiver domain 875 1003 IPR001789 GO:0000160(InterPro)
Cone6ag0342 1009 CDD HisKA 383 444 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone6ag0342 1009 FunFam Histidine kinase 3 868 1009 - -
Cone6ag0342 1009 ProSiteProfiles CHASE domain profile. 110 322 IPR006189 -
Cone6ag0342 1009 SMART REC_2 873 1003 IPR001789 GO:0000160(InterPro)
Cone6ag0342 1009 FunFam Histidine kinase 4 114 329 - -
Cone6ag0342 1009 Gene3D - 714 855 - -
Cone6ag0342 1009 Gene3D - 868 1009 - -
Cone6ag0342 1009 PANTHER TWO-COMPONENT HISTIDINE KINASE 32 1007 IPR050956 -
Cone6ag0342 1009 Gene3D CHASE domain 114 329 IPR042240 -
Cone6ag0342 1009 CDD HATPase_EvgS-ArcB-TorS-like 500 692 - -
Cone6ag0342 1009 Pfam His Kinase A (phospho-acceptor) domain 383 448 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone6ag0342 1009 Gene3D - 447 694 IPR036890 -
Cone6ag0342 1009 SUPERFAMILY CheY-like 872 1007 IPR011006 -
Cone6ag0342 1009 FunFam Histidine kinase 4 355 446 - -
Cone6ag0342 1009 ProSiteProfiles Histidine kinase domain profile. 390 694 IPR005467 -
Cone6ag0342 1009 SUPERFAMILY CheY-like 716 852 IPR011006 -
Cone6ag0342 1009 Gene3D - 356 446 - -
Cone6ag0342 1009 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 616 689 IPR003594 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0342 Cone-Chr6:1622438 Cone8ag1386 Cone-Chr8:10973791 0 dispersed
Cone6ag0342 Cone-Chr6:1622438 Cone9ag0376 Cone-Chr9:1690632 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46279 None None None None Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0342 K14489 - vvi:100254304 1540.4