Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0348 ATGAAGATCAGTTCGAAGAGAGCGAAACCAGAAATTCTCGAATCGCAGCCATACAATAAGAAGAAGCTCCGCTCCGATATTGCTCGCCGGAGACGAAATCAGATCTCACCAGTTCCGCCTTCCAATTTGAAGAGTTCTGGTAAGAATTCTGACTTTTCTAGCTTTTCTGTGGATTCTAGCTCGTGCTCGTGCTTCGGAGTTGAAGTTTCGTGTAATTTGAGTGGAGATTATGGTGAATCGGAGAGGAAGGCGAAGTCGAACTTGAAGAAGAGACAGTTCAGTGAGATTGACAGCTCTAGAAATCTGATTGATCGGAATGAGAAGTTCTCAGATCAGCCGTTACGTAGAATCACGAGGTCTTATTATAGACAAATGGAAAGCGAACGGAAAGAGGAGAGAAAAGAGGTTGGCGTTAGTGAAGCTGAAGCGTCTGAATCGTCGTACGTAGAGTCGAACTCTTGCGTTGGAGTTGAACTTCATGGAAAGAGAAGTTCCAAGTTCAAGAGTAAAAATGATATTGCGAAAGAGATTGGAGTAAATGAAGGTTCTAAAGCAGTTTCACGATCAGAAATTTCCTGCGTCGAACAAATTTCTGGAGACGTTTTATCTGAAATTTGGAAATCCAATGCTGGATGCGACAATGAATCCACGAAGGTTAAGGCAGAGGACGACGTTTCAGTCCCTTCCGGCGTTGAATGCAGCTCTAAGGCCAAGTCTAAAAGCATCGGTTCATTAACTGAGAATGAATTCGAGGTCTCTGAAAACAGAGCACTAGAATTTGCATTTCAGTATAATCCGATAAACGACGTTGATGCCTGTTTCACAGTTTCAAACTCAGATTCGATTACAGAGCAGTGGCCAAAGCGTTTCGGATTTGATTCCAATCTCGCTTGCACGGAGAAATTCTCTTACGAGGACATTGCAGAGTACTCGTCCAGCCAAGCATTTTCTGAGCTCCAGTCGGAGATTTTCCAGGAAAATTCAGATCCAGAATTCTCCGATTCGAATTTGTCTATTTTCCTCGATTCTGGAAGCGAATTTTCAGAACGATCCTTCGGAGATTCAACGCCTTCGCCTATTTACACACTGTTAATTCAGTACAGAGATGAATTTTCCAGATCAGCTACGCCGCTAGACGCCAGAGCTGCCTCGCTCCTTGAGGAAGAGTACAAAGATCATTCTTCGTTTTTGAGTTTCGAAAACGAGGAAAATGAAGAGAGCTACCAAATGTTAAGAAAAAGAGAGAGACAGCAAATCATTTTGTGTGACTACGCTGGAGAGTACTGCTCCGGGACGGATTGCGGCGATCTCATACTCCAGCAACGGTCACAGATGGTCCATTGGATCGTTGAGCAATCTACTGACTTGGAGCTTCACCAGGAGACTATGTTTCTAGGAGTTGCCCTCCTCGACAAGTTCCTAAGCAAAGGATTCTTCAAAAACAGAAGGTTCTTTCAAATTCTTGGAATAGCATGCCTTACATTGGCCACTAGGCTAGAAGAAAATCAACCCTATAACAGTGTGCGGCGAAAGAATTTCTTTGTAGATAGCAACACTTACTACAGAAGAGAAGTTGTCGCCATGGAATGGCTAGTTGAAGAGGTCCTCGAGTTCCGCTGTTTCCTACCAACTGTTTACAACTTCTTATGGTTCTACCTGAAAGCTGCTAGAGCTGATTCATCCGTGGAGAAGAAGACCAACTGCATGTCAATTTTAGTGTTATCAGACCGTGTCTTGATGCGGTATCAGCCCTCAACCGTTGCTGCTGCATTGGTCATTCTAGCTTCTCTGGAAAGCAACCAAGATGCATCCCATCAACGAGTGATGGAGACACACGTCAGGACAAAGTCTGATGATTTACCTGAATGCATAGAGAGTCTAGAGTGGTTGCTAAGGTATGTATGA 1905 43.88 MKISSKRAKPEILESQPYNKKKLRSDIARRRRNQISPVPPSNLKSSGKNSDFSSFSVDSSSCSCFGVEVSCNLSGDYGESERKAKSNLKKRQFSEIDSSRNLIDRNEKFSDQPLRRITRSYYRQMESERKEERKEVGVSEAEASESSYVESNSCVGVELHGKRSSKFKSKNDIAKEIGVNEGSKAVSRSEISCVEQISGDVLSEIWKSNAGCDNESTKVKAEDDVSVPSGVECSSKAKSKSIGSLTENEFEVSENRALEFAFQYNPINDVDACFTVSNSDSITEQWPKRFGFDSNLACTEKFSYEDIAEYSSSQAFSELQSEIFQENSDPEFSDSNLSIFLDSGSEFSERSFGDSTPSPIYTLLIQYRDEFSRSATPLDARAASLLEEEYKDHSSFLSFENEENEESYQMLRKRERQQIILCDYAGEYCSGTDCGDLILQQRSQMVHWIVEQSTDLELHQETMFLGVALLDKFLSKGFFKNRRFFQILGIACLTLATRLEENQPYNSVRRKNFFVDSNTYYRREVVAMEWLVEEVLEFRCFLPTVYNFLWFYLKAARADSSVEKKTNCMSILVLSDRVLMRYQPSTVAAALVILASLESNQDASHQRVMETHVRTKSDDLPECIESLEWLLRYV 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1692728 1695864 - Conep06aG0035400.1 Cone6ag0348 439232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0348 634 Pfam Cyclin, N-terminal domain 407 539 IPR006671 -
Cone6ag0348 634 Gene3D - 435 537 - -
Cone6ag0348 634 PANTHER CYCLINS 394 626 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone6ag0348 634 SUPERFAMILY Cyclin-like 543 631 IPR036915 -
Cone6ag0348 634 Gene3D - 538 634 - -
Cone6ag0348 634 SUPERFAMILY Cyclin-like 402 539 IPR036915 -
Cone6ag0348 634 Coils Coil 122 142 - -
Cone6ag0348 634 SMART cyclin_7 447 534 IPR013763 -
Cone6ag0348 634 ProSitePatterns Cyclins signature. 442 473 IPR048258 -
Cone6ag0348 634 MobiDBLite consensus disorder prediction 35 55 - -
Cone6ag0348 634 MobiDBLite consensus disorder prediction 1 23 - -
Cone6ag0348 634 MobiDBLite consensus disorder prediction 1 55 - -
Cone6ag0348 634 Pfam Cyclin, C-terminal domain 543 629 IPR004367 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0348 K21777 - - mdm:103452230 567.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0348 Cone-Chr6:1692728 Cone6ag1701 Cone-Chr6:12844184 4.89E-19 dispersed
Cone6ag0348 Cone-Chr6:1692728 Cone9ag0381 Cone-Chr9:1732722 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g524 . . . . . . Bma14g01920 . . . . Cma04g00085 . Car04g00086 . . . . . . . . . . . . . . . . . . . Cone6ag0348 Cone9ag0381 . . Chy10g00215 . . Blo11g00966 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01127 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008679 0 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 35