Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0352 ATGTCGTCAAGGTCATATTCTAATCTCTTGGAGCTTGCTTCTGGGGAATCTCCATCGTTCGGCCGGATGAGCAGGCAAATCCCTCGAATCATGACAGTGGCCGGATTAATATCCGATATAGATGATGACCGATCGGAAGGCTTTTTCTCTGACCACTCTTCCTCTGTTCAGAGGGACAGAATCATAATAGTGGCCAATGAGCTCCCCATAAGGGCTCAGAGAAAACCCGAAACCAGAGATTGGAGCTTTAGCTTGGATGAGAACTCTCTTCTCCTCCAGCTAAAAGATGGTGTAGGAGATGATGACGTGGATGTAGTTTATGTGGGTTGTCTTAAGGCAGAAGTTCACCCTAGTGAACAAGATGAGGTTTCAAAAATCCTCTTACAGTCTTTTAGATGTGTCCCTACATTTCTCCCACCTGAGCTTTATAGCAGGTACTACCATGGCTTCTGCAAGCAACAGCTTTGGCCTCTGTTCCACTACATGTTACCTTTATCGCCTGACCTAGGTGGTAGGTTTAATCGGAACCTATGGCAAGCTTATGTATCAGTCAACAAAATTTTTGCAGATAGAATCATGGAAGTCATTAACCCAGAAGATGACTTTGTTTGGATACATGATTATCATCTCATGGTTTTGCCCACCTTCTTGAGGAAAAGATTCAATCGGGTCAAGCTCGGGTTTTTCCTCCACAGCCCGTTCCCTTCGTCTGAAATTTATAAGACACTGCCTATTAGGGAAGAGCTTCTACGTGCCCTATTGAATTCAGATTTGATCGGGTTTCATACATTCGACTATGCCCGACATTTCTTATCATGCTGTAGCAGAATGCTTGGATTGACCTATGAATCAAAACGGGGTTATATAGGCATAGAGTATTATGGTCGAACCGTAAGTATCAAAATCCTTCCGGTAGGTATCCACATGGGTCAGCTCGAGTCCGTTTTGAGCCTTGCAGAAACCGAAACAAAAGTTTCTGAGCTGGTCAAAGAGTTTTCTGACAAAGGAAGGATAATGTTACTAGGAGTAGACGATATGGATATCTTCAAGGGGATAAGTCTAAAGCTTTTAGCCATGGAACAGCTTCTTCAACAAAACCCAAAATTCCAAGGAAAAGTAGTATTGGTACAAATTGCAAATCCGGCTAGAGGCAGGGGCAAAGACGTAAAAGAAGTCCAAGACGAGACAAAGTCTACAGTCAAACAGATAAATGATACGTTCGGAACACCCGGATATGACCCTGTTGTGTTAATTGAACAACCACTTCAATTTTACGAGAGAATTGCTTACTATGCTGTTGCAGAGTGTTGTCTTGTCACTGCTGTGAGAGATGGAATGAATTTGATTCCATATGAGTATATAATTTGTAGACATGGAAATGAGAGGCTGGATAAGGTTTTAGGGCTCAACCGTAATTCGAAGAAGAGCATGTTAGTTGTTTCTGAGTTTATAGGCTGCTCTCCGTCTTTAAGTGGCGCCATCCGGGTCAACCCGTGGAACATTGAGGCCGTTGCAGATGCAATGTACACTGCTTTAGAGATGCCTTCTTCAGAAAAACAATTAAGGCATGAGAAACATTATAGGTATGTAAGCACACATGATGTTGGGTACTGGGCCCGTAGCTTCTTACAAGATTTGGGACGGACTTGTAGGGACCATGTCAGGAGGAGGTGTTGGGGAATTGGGTTTGGTTTGAGTTTTAGAGTTGTAGCGCTTGATCCAAACTTTAGGAAGCTTTCGATGGAGCATATTGTTTCGTCTTATAAGAGGACAAGTACAAGGGCAATCCTCTTGGACTATGATGGGACTTTGATCCCTCCAGGCTCAATTGATAAGAGTCCTAGTTCCAGATGTATTGAGATCCTTAACAGCCTCTGTCGGGATAAGAACAATGTGGTTTTTATTGTTAGTGCTAGAAGCCGTAAAATGTTATCTGAATGGTTCTCTCCTTGTGAGAGGCTCGGGATTGCTGCGGAGCATGGCCACTTTCTAAGGTTGAAGAGATCTGCAGAATGGGAAACGTGTGTGGGGCCCACGGACTGTAGCTGGAAGCAGATTGCAGAGCCAGTTATGAAACTATACACCGAAACAACTGATGGGTCCACCATTGAAGATAAAGAAACAGGGGTGGTGTGGTGTTATGAAGATGCTGATCGGGATTTTGGCTCATGTCAAGCCAAGGAGCTTCATGACCATCTCGAAAGTGTGCTTGCTAATGAGCCTGTTACTGTGAGGCGTGGTTGGAATATTGTGGAAGTTGTGCCACAGGGTGTAAGTAAGGGGCTTGTGGCGAAAAGGCTACTTTCTATTATGGAAGAGAGAGGGATGTCTCCAGATTATGTTCTGTGCATAGGGGATGATAGATCGGACGAGGACATGTTTGAGATGATTAATAGCGCAATGGCGGGAGAACCGTCTAGTCTTCCTACAGCGGAAGTTTTTGCATGTACTGTTGGGAAAAAACCAAGCAAAGCTAAGTACTATTTAGATGATGTTGCGGAGATTTTCCGGTTGATGCAGGGATTGGCCTCTGTTTCGGAGCAGATAGTTTCTACATAA 2559 43.92 MSSRSYSNLLELASGESPSFGRMSRQIPRIMTVAGLISDIDDDRSEGFFSDHSSSVQRDRIIIVANELPIRAQRKPETRDWSFSLDENSLLLQLKDGVGDDDVDVVYVGCLKAEVHPSEQDEVSKILLQSFRCVPTFLPPELYSRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRNLWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGIEYYGRTVSIKILPVGIHMGQLESVLSLAETETKVSELVKEFSDKGRIMLLGVDDMDIFKGISLKLLAMEQLLQQNPKFQGKVVLVQIANPARGRGKDVKEVQDETKSTVKQINDTFGTPGYDPVVLIEQPLQFYERIAYYAVAECCLVTAVRDGMNLIPYEYIICRHGNERLDKVLGLNRNSKKSMLVVSEFIGCSPSLSGAIRVNPWNIEAVADAMYTALEMPSSEKQLRHEKHYRYVSTHDVGYWARSFLQDLGRTCRDHVRRRCWGIGFGLSFRVVALDPNFRKLSMEHIVSSYKRTSTRAILLDYDGTLIPPGSIDKSPSSRCIEILNSLCRDKNNVVFIVSARSRKMLSEWFSPCERLGIAAEHGHFLRLKRSAEWETCVGPTDCSWKQIAEPVMKLYTETTDGSTIEDKETGVVWCYEDADRDFGSCQAKELHDHLESVLANEPVTVRRGWNIVEVVPQGVSKGLVAKRLLSIMEERGMSPDYVLCIGDDRSDEDMFEMINSAMAGEPSSLPTAEVFACTVGKKPSKAKYYLDDVAEIFRLMQGLASVSEQIVST 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1717486 1720961 + Conep06aG0036000.1 Cone6ag0352 439236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0352 852 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 593 710 - -
Cone6ag0352 852 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 313 - -
Cone6ag0352 852 Gene3D Glycogen Phosphorylase B; 314 531 - -
Cone6ag0352 852 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 550 - -
Cone6ag0352 852 NCBIfam HAD-IIB family hydrolase 596 800 IPR006379 -
Cone6ag0352 852 CDD HAD_TPP 595 832 - -
Cone6ag0352 852 FunFam Trehalose-6-phosphate synthase 2 678 756 - -
Cone6ag0352 852 CDD GT20_TPS 60 546 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cone6ag0352 852 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 845 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cone6ag0352 852 Pfam Glycosyltransferase family 20 60 546 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cone6ag0352 852 FunFam Alpha,alpha-trehalose-phosphate synthase 315 531 - -
Cone6ag0352 852 Gene3D - 676 756 - -
Cone6ag0352 852 FunFam Trehalose-6-phosphate synthase 10 724 852 - -
Cone6ag0352 852 SUPERFAMILY HAD-like 594 842 IPR036412 -
Cone6ag0352 852 Pfam Trehalose-phosphatase 597 832 IPR003337 GO:0005992(InterPro)
Cone6ag0352 852 Gene3D Glycogen Phosphorylase B; 51 313 - -
Cone6ag0352 852 Gene3D - 596 829 IPR023214 -
Cone6ag0352 852 NCBIfam trehalose-phosphatase 594 842 IPR003337 GO:0005992(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0235 Cone-Chr1:1538897 Cone6ag0352 Cone-Chr6:1717486 9.13E-142 dispersed
Cone5ag1625 Cone-Chr5:11434317 Cone6ag0352 Cone-Chr6:1717486 2.57E-137 dispersed
Cone6ag0352 Cone-Chr6:1717486 Cone8ag0594 Cone-Chr8:5022593 0 dispersed
Cone6ag0352 Cone-Chr6:1717486 Cone9ag0385 Cone-Chr9:1756657 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0352 K16055 - vvi:100252552 1433.7