Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0358 ATGGGGATGGCGAGGATGGAAGAAGAAGATGAGGTCAGGTGCACAGGGAAGAGGCTGAAATGCTCAAGGAAATATGAAGATAAGGAAGACGAAGAAGCTGATGATGAAGAAGAAGAAGATGAAGAAAGTGAGCAACAGAGCGAGCTTCCGCTTAAGCAAGGGCTTTCCTTCTTTCCTATTGCTCCTACTTCCTTTGTCGTCTCTGATGCTTTGGAGCCTGATTTTCCGATCATTTATGTAAATAAAGTCTTCGAGATCTTCACTGGTTATCGTGCCGATGAGGTCCTTGGTCGAAACTGTCGGTTCTTACAATACAGGGACCCTCATGCACAAAGGAGGCATCCATTGGTAGATCCTGTTGTTGTTTCCGAGATAAGAAGGTGTCTTGAGGAAGGTATTGAATTCCAAGGTGAGCTCCTCAATTTCAGGAAAGATGGCACTCCCTTGGTGAACAGGCTAAGACTTGCACCCATACATGACGATGATGGAATAGTGACACACATAATAGGTATTCAAGTGTTTACCGAAACAAAAATCGATCTGAATAGGGTATCATACCCTGTTTTCAAAGAGACTTGCAATCAACAATACGATCAGTCCGGAAAATACATCTTGTACGGACAGTCACAATTCAGCCAACGTGAAGAAACCTGTGGAATACTTCAACTTTCTGATGAAGTCCTGGCCCACAACATTTTATCACGATTAACACCAAGGGATGTTGCATCTGTTGGATCTGTCTGCAGAAGAATCCGTCAATTGACAAAGAATGAACATCTAAGGAAAATGGTTTGTCAAAATGCATGGGGAAGGGAAGTCATAGGTACATTAGAACTAATGACTAAGAAGTTAGGGTGGGGGCGTTTGGCTAGAGAACTAACAACTCTTGAAGCTGTTTGTTGGAGTAAACTGACCGTAGGAGGTGCTGTGGAGCCTTCCCGTTGCAATTTCAGTGCTTGTGCTGCTGGGAATAGACTTGTATTATTTGGAGGAGAAGGGGTAAACATGCAGCCTATGGACGATACTTTTGTCCTCAATCTTGATGCTGCAAATCCCGAGTGGCGTAGAGTCAGCGTTAAATCGTCCCCACCTGGGCGCTGGGGCCATACCCTCTCTTGCCTAAATGGTTCTTGGTTAGTGGTTTTTGGGGGATGTGGGAGAAAAGGGTTACTGAACGATGTGTTTGTTCTAGACTTAGACGCCAAACAGCCGACGTGGAAAGAAGTTTCAGGTGGGACACCCCCTCTTCCAAGATCTTGGCACAGCTCTTGCACGATAGAAGGTTCTAAATTGGTAGTCTCAGGTGGATGTACAGATGCCGGAGTACTTCTAAGCGACACGTACTTATTAGATCTAACAATAGAGGAACCAACCTGGAAAGAGATTCCCACCTCATGGACCCCCCCTTCAAGATTAGGACATTCTCTTTCGGTTTATGGTCAGAAAAAGATTCTTATGTTTGGTGGGCTTGCTAAAAGCGGGCACTTGCAGCTAAGATCAGGAGAAGCATACACCATTGATTTAGAAGAGGAAGAGCCTCAATGGAGGCAGATTGAGTGTGGTGTAGGGAGCCAGAATGCAGTGGTCCCACCTCCTAGACTTGATCATGTTGCCGTTACGATGCCTTGTGGGAGGATAATCATTTTTGGAGGTTCAATAGCTGGCTTGCACTCTCCTTCTCAGCTCTTCCTTTTGGATCCCTCTGAGGAGAAGCCGGCTTGGAGGATACTTAATGTTCCAGGTCAACCTCCGAAATTTGCATGGGGTCATGGCACTTGTGTGGTTGGAGGGACTAAACTTCTTGTGTTAGGTGGGCATACCGGGGAGGAATGGATTCTTAACGAATTGCACGAGCTACGCTTAGCAAGTTGGCAAGAGTCCGAGCTCTGA 1890 45.87 MGMARMEEEDEVRCTGKRLKCSRKYEDKEDEEADDEEEEDEESEQQSELPLKQGLSFFPIAPTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPHAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLAPIHDDDGIVTHIIGIQVFTETKIDLNRVSYPVFKETCNQQYDQSGKYILYGQSQFSQREETCGILQLSDEVLAHNILSRLTPRDVASVGSVCRRIRQLTKNEHLRKMVCQNAWGREVIGTLELMTKKLGWGRLARELTTLEAVCWSKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRKGLLNDVFVLDLDAKQPTWKEVSGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTIEEPTWKEIPTSWTPPSRLGHSLSVYGQKKILMFGGLAKSGHLQLRSGEAYTIDLEEEEPQWRQIECGVGSQNAVVPPPRLDHVAVTMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPAWRILNVPGQPPKFAWGHGTCVVGGTKLLVLGGHTGEEWILNELHELRLASWQESEL 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1746655 1750052 + Conep06aG0036600.1 Cone6ag0358 439242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0358 629 CDD F-box_AtADO-like 219 265 - -
Cone6ag0358 629 SUPERFAMILY Kelch motif 527 621 IPR015915 GO:0005515(InterPro)
Cone6ag0358 629 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 61 624 - GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007623(PANTHER)|GO:0009637(PANTHER)|GO:0019005(PANTHER)
Cone6ag0358 629 SMART pac_2 136 177 IPR001610 -
Cone6ag0358 629 FunFam Putative LOV domain-containing protein 497 625 - -
Cone6ag0358 629 Pfam F-box-like 229 266 IPR001810 GO:0005515(InterPro)
Cone6ag0358 629 Gene3D - 495 628 IPR015915 GO:0005515(InterPro)
Cone6ag0358 629 FunFam Adagio protein 1 54 183 - -
Cone6ag0358 629 MobiDBLite consensus disorder prediction 24 49 - -
Cone6ag0358 629 Gene3D PAS domain 56 183 - -
Cone6ag0358 629 MobiDBLite consensus disorder prediction 29 45 - -
Cone6ag0358 629 SUPERFAMILY PYP-like sensor domain (PAS domain) 72 172 IPR035965 -
Cone6ag0358 629 SUPERFAMILY F-box domain 213 272 IPR036047 GO:0005515(InterPro)
Cone6ag0358 629 Pfam Galactose oxidase, central domain 428 479 - -
Cone6ag0358 629 Pfam Galactose oxidase, central domain 379 426 - -
Cone6ag0358 629 SUPERFAMILY Kelch motif 300 515 IPR015915 GO:0005515(InterPro)
Cone6ag0358 629 Gene3D - 292 494 IPR015915 GO:0005515(InterPro)
Cone6ag0358 629 NCBIfam PAS domain S-box protein 76 171 IPR000014 -
Cone6ag0358 629 CDD PAS 61 171 IPR000014 -
Cone6ag0358 629 FunFam Putative LOV domain-containing protein 291 496 - -
Cone6ag0358 629 Pfam PAS domain 71 172 IPR000014 -
Cone6ag0358 629 Coils Coil 25 48 - -
Cone6ag0358 629 Gene3D - 213 264 - -
Cone6ag0358 629 Pfam Kelch motif 534 581 IPR011498 GO:0005515(InterPro)
Cone6ag0358 629 ProSiteProfiles PAS repeat profile. 77 108 IPR000014 -
Cone6ag0358 629 Pfam Galactose oxidase, central domain 314 364 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0358 K12116 - - csv:101222712 1089.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0358 Cone-Chr6:1746655 Cone8ag1349 Cone-Chr8:10827919 2.63E-13 dispersed
Cone6ag0358 Cone-Chr6:1746655 Cone9ag0388 Cone-Chr9:1773687 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g502 . Blo16g00757 . Bda11g00188 Bpe13g01006 . . . Cmo04g01103 . Cma04g01032 Cma04g00079 Car04g00963 Car04g00078 Sed04g2999 . . Bhi07g00405 Tan04g1496 Cmetu10g0634 Lac13g1318 Hepe01g0598 . . Cla07g00531 Cam07g0573 Cec07g0622 Cco07g0597 Clacu07g0576 Cmu07g0611 Cre07g0943 . . Cone6ag0358 Cone9ag0388 Lsi04g01097 . . . . . . Bda11g00188 . . . Bma06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008842 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34