Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0370 ATGCACAAATTGTTCAAAACTCGAAATCTCTCTTACCCAATTTATGGGTATAGTATCCTCCCTAATACCTCACTCATATGCTCTTCTTATAAAACTCTATCATCCTCGAGCTCGAAATGGACGTTTCGAAATACCGATTCATTGGAAGAGCGGCCTGATCATGTCGCAGATGCCGGAGAATCTACGGTTCAAATTTCTCACCCGTGGCCAGAGTGGGTGGATTTCATGAAGTGCTTGTTGAAGAGAGGTTACTTTGAAGGAGACAGAAACCCATTTGTAGAGGCTGAATTGGGTTCTAAGGAACTGAATCGTATTCGTACTGCCTGCCTTAACTTCGCAAGAAATCAGTCTGATCTTATAAGGTACTTATCAAAGAAAGATATCCAAATTATCGTGGCATATGGATGCCCAAGTGTGGATAGAAAAGTCGTCAACTCAGGGAAGCGTTTGAGGGCATATGTTGGAATCGATGAAAGAAATGTCTGCCGTTCTTGCAACTTGAGGGGAGGGTGTGAACGGGCCTATATCGAAGCCCGTCAAGACAAAAATGGGAGGACCGTGGATGTCATGCGCGTCCTGTTAATGTATGGGCTTGAGCCCATTTCTGTTATAGTGGAGAACAAGCCTTGCTTGAACAAAGCGGTTAAGGAATCAGGGAGAAGGCTGATTAAAGAACTGGTTGAACATAGCACAGAGGAACTTCATTCCAATCATGTGAAGATTGGATCAATGGAAAATCAATCGTGCCCACAAGAAGAAGATCACGAGGATACTTTAATGAAGCCAGGGGACTGGCTTTGCCCCAAGTGTACCTTCATAAATTTTTCCCGGAATGTCAAGTGCTTGCGTTGTGACTATTTGTTCGAAGAAAGATTGAGGGAGATGAACAAGGATTTGGATCATCTTCCATTGTTGAAAGGGGATTGGAAATGTGAAAAATGCAATTTCTTGAATTTCGCAAAGAACTCAAGGTGTTTGCTATGCAAAGAAAATCCTCCAAAACGGCATCTTAATCCTGGGGAATGGGAGTGTGAATCGTGCAACTACATAAATTTTAGAAAAAACATGGTGTGCTTGAGGTGTGATCATAGACGGATCAAAACATCAAACACTTCAGAAACTTCTCCAAATGGGAATTATCATGCAGATAGTGAGCATTCATTTGGGCAAGACGGAAGAAGTAGAAACAGAGATTCTGGTAAGTGGAGATTTCTCGAAAATGACAAGGAAGACGAGGCTTCTGGGTTCATTGACTTCCCAATTTCTGGTGGCAAGAGTGAGCTATCTCATAACACAGAAATGATAGAGAGATGGAAAGTGGAGATGGTAGAGAGGAGAAAATTTGTAAAGAAGAAAAGGGAAAGAGAAAACCGAACAGAAAAAGAACAGAGTCTTAGGTCAGGTGTTATTCCAAGCAGATTTGAGTTGTCTGAATCTGGTGAAGATGAAGAGATAGCCGAGTGGTTTGGGACTCCAAAGAAAGAAACAGAAATTTAG 1497 41.95 MHKLFKTRNLSYPIYGYSILPNTSLICSSYKTLSSSSSKWTFRNTDSLEERPDHVADAGESTVQISHPWPEWVDFMKCLLKRGYFEGDRNPFVEAELGSKELNRIRTACLNFARNQSDLIRYLSKKDIQIIVAYGCPSVDRKVVNSGKRLRAYVGIDERNVCRSCNLRGGCERAYIEARQDKNGRTVDVMRVLLMYGLEPISVIVENKPCLNKAVKESGRRLIKELVEHSTEELHSNHVKIGSMENQSCPQEEDHEDTLMKPGDWLCPKCTFINFSRNVKCLRCDYLFEERLREMNKDLDHLPLLKGDWKCEKCNFLNFAKNSRCLLCKENPPKRHLNPGEWECESCNYINFRKNMVCLRCDHRRIKTSNTSETSPNGNYHADSEHSFGQDGRSRNRDSGKWRFLENDKEDEASGFIDFPISGGKSELSHNTEMIERWKVEMVERRKFVKKKRERENRTEKEQSLRSGVIPSRFELSESGEDEEIAEWFGTPKKETEI 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1807509 1810147 + Conep06aG0037800.1 Cone6ag0370 439254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0370 498 SMART zf_4 263 287 IPR001876 -
Cone6ag0370 498 SMART zf_4 340 364 IPR001876 -
Cone6ag0370 498 SMART zf_4 307 331 IPR001876 -
Cone6ag0370 498 ProSiteProfiles Zinc finger RanBP2 type profile. 261 284 IPR001876 -
Cone6ag0370 498 SUPERFAMILY Ran binding protein zinc finger-like 305 333 IPR036443 -
Cone6ag0370 498 MobiDBLite consensus disorder prediction 370 399 - -
Cone6ag0370 498 ProSiteProfiles Zinc finger RanBP2 type profile. 338 367 IPR001876 -
Cone6ag0370 498 ProSitePatterns Zinc finger RanBP2-type signature. 342 361 IPR001876 -
Cone6ag0370 498 ProSitePatterns Zinc finger RanBP2-type signature. 309 328 IPR001876 -
Cone6ag0370 498 SUPERFAMILY Ran binding protein zinc finger-like 332 367 IPR036443 -
Cone6ag0370 498 Gene3D - 335 367 - -
Cone6ag0370 498 Gene3D - 252 287 - -
Cone6ag0370 498 Gene3D - 300 334 - -
Cone6ag0370 498 PANTHER ZINC FINGER PROTEIN 300 386 - GO:0003729(PANTHER)|GO:0005737(PANTHER)
Cone6ag0370 498 ProSitePatterns Zinc finger RanBP2-type signature. 265 284 IPR001876 -
Cone6ag0370 498 ProSiteProfiles Zinc finger RanBP2 type profile. 305 334 IPR001876 -
Cone6ag0370 498 MobiDBLite consensus disorder prediction 450 498 - -
Cone6ag0370 498 SUPERFAMILY Ran binding protein zinc finger-like 255 285 IPR036443 -
Cone6ag0370 498 MobiDBLite consensus disorder prediction 370 384 - -
Cone6ag0370 498 Pfam Zn-finger in Ran binding protein and others 340 362 IPR001876 -
Cone6ag0370 498 Pfam Zn-finger in Ran binding protein and others 306 329 IPR001876 -
Cone6ag0370 498 Pfam Zn-finger in Ran binding protein and others 261 285 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0370 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0337 Cone-Chr19:2731121 Cone6ag0370 Cone-Chr6:1807509 6.36E-53 dispersed
Cone3ag0788 Cone-Chr3:4037356 Cone6ag0370 Cone-Chr6:1807509 1.42E-51 dispersed
Cone6ag0370 Cone-Chr6:1807509 Cone10ag0765 Cone-Chr10:3866575 1.58E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g489 . . . Bda11g00183 Bpe13g01010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0370 . . Csa05g01992 . . . . . Bda11g00183 . . . . . . Cmo15g01024 . Cma15g00977 . Car15g00923 Cpe13g00350 Cpe04g01365 Bhi12g00936 . . . Hepe02g2626 . . Cla01g00635 . . Cco01g0681 Clacu01g0651 Cmu01g0625 Cre09g1879 Lsi09g00684 . Chy09g00823 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011612 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29