Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0375 ATGGCCGACATGAAAGACAAGTTCAAGGGCTTCATGAACAAGGTTTCATCTTCTTCTTCTTCTAGCAAATTCAAAGGTCAGGGTAGAGTCCTTGGATCGTCTTCTTCTGGACCGGCTAATCCAATCCACGCCCGCTACTCGCAAAATACCAGCTCCAAAGATTCCGTCTCTACGGTAATTTCTAAGCCTTCAGCTGAAAAAGAAAAACCCGTAATTCCTGCTAACAATAATAAGTCGGAATCATCAGATACTTCGACTCTAAATCGTAAGCAGTCCGATGGATTCGATCCATTTGACTCGTTTATCTCTTCTGGGAATAGATCTCAGAATGGATATTCATTAAATTCCTATGAATGCCCAATTTGTGGGCAGTGTTATGGATCTGAAGAAGAGGTATCTGTTCATGTAGACATTTGTGGCAATAATTCAGTAGAAAGTAGCTCTATAGAAGTTGCGAAGGAAGTTCCAAATAATGGGGCTGATTCCTATAATAAGAATGAGTTAGAGATTTGCATTGGTACCTTTTTATCAGGGAAGATATCAGACGGTTCATTGGAAGTTGTTCTCAAGCTGTTTAGGAATATATCAAGGGAACCGGAAAATTCAAGGTTTAGGAAGATTAGAATGAGTAATCCAAAGATTAGGGAGGCGATTGGTGACGTGGCAGGTGGGGTTGAGTTGTTGGAATTAGTTGGGTTTCAGTTTAGAGAGGAAGATGGCGAGATGTGGGCAGCTATGGAGGTTCCAACAAAGGAAGGAATTGATGTAATAAACAAGGTGATAGCTTTACTTGAACCACCTAAAGTAGAAGAAGAACCGCAAAAGAAAGGTAATAGTTCAGCTCGGGTGGGCGAACCCGTTGTGCCAAACAAAGATGAACCAGTTGAACCGAAGAAAATTGATAGACAGGTACGGGTATTCTTTTCCGTTCCAGAAAGTGTAGCTGCAAAAATCGAGCTGCCAGATTCCTTCTACAACCTCTCCTTAGACGAGATGAAAACAGAAGCTGATATGAAGAAGAAAAGGCTTGCAGAATCCCAGCTCTTGATCCCTAAATCACTGAAGGAAAAGCAAGCACAAGCTGCGAAAAGAAAATACAGAAGAACTGCTATAAGGATCCAGTTTCCAGACGGAACAGTTCTCCAAGGCATTTTTGCTCCTTGGGAAACAACTAGCTCTCTCTATGAGTTTGTGAGCTCGTCGTTGAAAGAACAGTGCTTGGAATTTGAGCTGCTCCATCCCGTGCCGATAATGGTTAAAAGGCAGGTGATCCCTCATTTTCCGGCCCCAGGTGAGAAGCCTAGAACGTTAGAGGAAGAGCATTTGGTCCCTTCTGTTCTTATCAAGTTCAGACCTATTGAAACCGATTCTATTGTCTTCACTGGGCTTTGTAATGAGCTTCTTGAGATAAGCGAACCCCTGTTACCGGGTTTGCCATTGCTCCTGCATAAAGCATGA 1458 42.66 MADMKDKFKGFMNKVSSSSSSSKFKGQGRVLGSSSSGPANPIHARYSQNTSSKDSVSTVISKPSAEKEKPVIPANNNKSESSDTSTLNRKQSDGFDPFDSFISSGNRSQNGYSLNSYECPICGQCYGSEEEVSVHVDICGNNSVESSSIEVAKEVPNNGADSYNKNELEICIGTFLSGKISDGSLEVVLKLFRNISREPENSRFRKIRMSNPKIREAIGDVAGGVELLELVGFQFREEDGEMWAAMEVPTKEGIDVINKVIALLEPPKVEEEPQKKGNSSARVGEPVVPNKDEPVEPKKIDRQVRVFFSVPESVAAKIELPDSFYNLSLDEMKTEADMKKKRLAESQLLIPKSLKEKQAQAAKRKYRRTAIRIQFPDGTVLQGIFAPWETTSSLYEFVSSSLKEQCLEFELLHPVPIMVKRQVIPHFPAPGEKPRTLEEEHLVPSVLIKFRPIETDSIVFTGLCNELLEISEPLLPGLPLLLHKA 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1826523 1828934 + Conep06aG0038300.1 Cone6ag0375 439259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0375 485 MobiDBLite consensus disorder prediction 268 294 - -
Cone6ag0375 485 Pfam UBX domain 365 417 IPR001012 GO:0005515(InterPro)
Cone6ag0375 485 CDD PUB 172 265 - -
Cone6ag0375 485 SUPERFAMILY Ubiquitin-like 337 450 IPR029071 -
Cone6ag0375 485 SUPERFAMILY PUG domain-like 183 244 IPR036339 -
Cone6ag0375 485 Pfam PUB domain 183 247 IPR018997 -
Cone6ag0375 485 SMART PGNneu 183 250 - -
Cone6ag0375 485 FunFam UBX domain-containing protein 6 358 451 - -
Cone6ag0375 485 MobiDBLite consensus disorder prediction 12 62 - -
Cone6ag0375 485 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 474 - GO:0050832(PANTHER)
Cone6ag0375 485 Gene3D - 358 452 - -
Cone6ag0375 485 MobiDBLite consensus disorder prediction 1 96 - -
Cone6ag0375 485 MobiDBLite consensus disorder prediction 74 96 - -
Cone6ag0375 485 ProSiteProfiles UBX domain profile. 364 450 IPR001012 GO:0005515(InterPro)
Cone6ag0375 485 Gene3D - 178 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0375 Cone-Chr6:1826523 Cone7ag0084 Cone-Chr7:370321 3.07E-08 dispersed
Cone6ag0375 Cone-Chr6:1826523 Cone9ag0404 Cone-Chr9:1870228 1.37E-277 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0375 K14011 - csv:101209321 548.125