Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0376 ATGGCTAGTGCTATGAAGCAACAACTAGTTGGAGTTCCAGTTGCAGGTTCACATCTGCTTTTCTCCTCTTTTGGTTCTATTGCTGGAATCTCTGAGCCATGGAACAATTTCAAGCTCTCTTCTGGGTCTTCGGGGCAATTAACCATCTTCTATGATGGTAACATTAATGTGTTTGATAACATCTCCCCTGAAAAGGCTCAGGCTATAATGCTTCTGGCTGGGGCTGCTCTGCCTTCCAACTTAGCATTAGCATACCCAAGGGGTCAAGCTCAGGGAAGTAACCAGAAGTTGGTGGCAGGTGATGGTGGTCGGGCGAGTCAGGCACCAAACGCACCACCGCCTTGCTCTGCTGGTGGGGCCCAGTCAGTGAGTGGGTCCACTAGTACTGATGAACAGGTGGCTGCTAAAACCTCAGGAGCTCTTTCCACTCCTGTTAGCAAACCAGGGCCTCCAAAAATTACCTTGATGCCTTCTGGATCTGCTGTTCCACAGGCTCGGAAAGCATCCTTGGCTCGTTTTTTGGAGAAGCGCAGGGAAAGGGTGATGAGTGCAGCTCCATACAACCTGAACAAGACATCTGCAGAGGGTTCTACCCCTCCAGAAGCTAATAACGCTAATTCCTCTTCAGTTCCAGAAGCTGGGGATGCTCCAAACTAA 657 49.77 MASAMKQQLVGVPVAGSHLLFSSFGSIAGISEPWNNFKLSSGSSGQLTIFYDGNINVFDNISPEKAQAIMLLAGAALPSNLALAYPRGQAQGSNQKLVAGDGGRASQAPNAPPPCSAGGAQSVSGSTSTDEQVAAKTSGALSTPVSKPGPPKITLMPSGSAVPQARKASLARFLEKRRERVMSAAPYNLNKTSAEGSTPPEANNANSSSVPEAGDAPN 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1830200 1832466 + Conep06aG0038400.1 Cone6ag0376 439260

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0376 218 MobiDBLite consensus disorder prediction 117 144 - -
Cone6ag0376 218 ProSiteProfiles Tify domain profile. 40 75 IPR010399 -
Cone6ag0376 218 MobiDBLite consensus disorder prediction 93 167 - -
Cone6ag0376 218 MobiDBLite consensus disorder prediction 186 218 - -
Cone6ag0376 218 Pfam tify domain 43 74 IPR010399 -
Cone6ag0376 218 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 15 197 IPR040390 GO:0005634(PANTHER)|GO:0009611(PANTHER)|GO:0031347(PANTHER)|GO:2000022(PANTHER)
Cone6ag0376 218 SMART tify_2 40 75 IPR010399 -
Cone6ag0376 218 MobiDBLite consensus disorder prediction 180 218 - -
Cone6ag0376 218 Pfam Jas motif 163 187 IPR018467 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0376 K13464 - - vvi:100262965 199.134
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0746 Cone-Chr19:6086161 Cone6ag0376 Cone-Chr6:1830200 8.09E-26 wgd
Cone6ag0376 Cone-Chr6:1830200 Cone9ag0405 Cone-Chr9:1873394 1.68E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g480 . . . . . Bpe10g00980 . . Cmo04g01093 . Cma04g01015 Cma04g00070 Car04g00951 Car04g00065 . . . Bhi07g00375 Tan04g1530 . Lac13g1371 Hepe01g0565 . . Cla07g00565 Cam07g0591 Cec07g0659 Cco07g0630 Clacu07g0595 Cmu07g0628 Cre07g0968 . Cone19ag0746 Cone6ag0376 Cone9ag0405 Lsi04g01112 . . . Blo06g01005 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001064 2 5 0 2 2 2 4 2 2 1 2 2 4 2 2 4 2 5 4 2 2 2 2 2 2 2 2 11 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46281 PF00154 RecA 3.50E-117 CL0023 Cone TF