Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone6ag0390 | ATGAAAAGGGAACACTATCAACTGAATCTCCACCCTCAACCAGACGCTCCAGACCCCCCGCCGTCCATACCCGCTGGCTCTAGAGGCGGCGACATGGATGAGCTTTTGGCCGTTTTAGGTTACAAAGTTAGATCATCTGACATGGCCGAAGTTGCTCAGAAACTCGAGCAGCTGGAAGAAGTCATGATGGGGAATCATGATGTTCACGGCGGATATCAAGGGGTCGGCATCTCTCAGCTCGCTTCTGAAACTATCCATTACAATCCTTCTGATCTATCGACCTGGCTGGGGAGCATGATCTCGGAGCTCCATCCGGATCCCATTTTCGACCCGATTGTCTCTTCTCTGTCTCATCAGTCACAATCATCCATTGATTTCGCCGAATCTTCCACCATAACAACCTCCATGGATTTCGGTGCAGATCAGAACTACAAACCGCCGCCGCAGCAGCAGCACCAGAGTCAAGCAGTACTAGACTTCTCTTCTTCTTGCTCCGATTACGATCTCAAAGCTATTCCCGGTAAGGCTATTTATAGTAGTTCAGAAAACGCTGTTTCATCTAGGGAGAAGAAGCGGTTTAAACCTTCTTCTGGGTCGGAAAATAATTTCGACTGGATCTCTTGTTCTTCTTCTTCGACAACACCAACAACGACAAATACGGCGAGTCGTCCTGTTGTACTCGTTGACTCACAAGAAAACGGAATTCGACTCGTTCATACTCTAATGGCTTGCGCTGAAGCGGTTCAGCGCAACAATCTTAACCTAGCTGAGGCTCTTGTCAAGCAGATCGGATTCTTAGCGATTTCTCAAGCCGGAGCCATGGGGAAGGTGGCTACCTTCTTCGCCGAAGCATTAGCTCGTCGGATTCTTCGTCAATTTCCTCCAACTCCGCTTAATTACTCTCTCTCTAACATGCTTCAAATGCATTTCTACGAGAGCGCTCCTTACCTCAAATTCGCCCATTTCACTGCAAATCAAGCGATTCTAGAATCTTTTGAAGGGAAGAAACGCGTCCACGTTATCGATTTTTCGATCAACCAGGGGATGCAGTGGCCGGCTCTTATTCAAGCTCTAGCTCTCCGTCCGGGTGGTCCTCCGGCTTTCCGGTTGACCGGGATCGGACCTCCGGCTCCTGATAACTCCGATTACCTTCGGGAAGTTGGACGGAAGCTCGCTCAGCTGGCTGATACGGTTCACGTCGAGTTCGAGTACAGAGGCTTTGTTGCGAATAGCATAGCAGATCTCGACTCGTCCCTGCTTGATCTCGGACCGAATCACAACGAGTCGGTGGCGGTTAACTCGGTTTTCGAGTTGCATAAATTGTTGGCCCGGCCCGGAGCGATGGAGAAGGTCTTGTCTTTGGTGAAGGAGATTAAGCCGGAGATTGTTACCGTGGTTGAGCAGGAAGCGAACCACAACGGTCCTGTTTTTCTAGACCGGTTCACTGAGTCACTGCACTATTACTCGGCTCTGTTTGACTCGTTAGAAGGATCGATGAATAATCAGGACAAGGTCATGACGGAGATGTACTTAGGGGAGCAGATCTGTAACGTGGTGACTTGTGAAGGAGTGGACCGAGTGGAGCGGCACGAGTCTTTGGCTCACTGGCGGACGCGGTTCGACTCGGCGGGGTTCGCACCCGTTCACCTCGGGTCCAACGCGTTCAAGCAAGCCAGCATGTTACTGGCTTTGTTCGGAAGTGGAGATGGTTACAAGGTGGAAGAGAACGATGGGTGCTTGACGCTTGGCTGGCACAGCCGTCCACTCATAGCCACGTCTGCTTGGAGAGTCGGTGACACTCACTGA | 1806 | 50.89 | MKREHYQLNLHPQPDAPDPPPSIPAGSRGGDMDELLAVLGYKVRSSDMAEVAQKLEQLEEVMMGNHDVHGGYQGVGISQLASETIHYNPSDLSTWLGSMISELHPDPIFDPIVSSLSHQSQSSIDFAESSTITTSMDFGADQNYKPPPQQQHQSQAVLDFSSSCSDYDLKAIPGKAIYSSSENAVSSREKKRFKPSSGSENNFDWISCSSSSTTPTTTNTASRPVVLVDSQENGIRLVHTLMACAEAVQRNNLNLAEALVKQIGFLAISQAGAMGKVATFFAEALARRILRQFPPTPLNYSLSNMLQMHFYESAPYLKFAHFTANQAILESFEGKKRVHVIDFSINQGMQWPALIQALALRPGGPPAFRLTGIGPPAPDNSDYLREVGRKLAQLADTVHVEFEYRGFVANSIADLDSSLLDLGPNHNESVAVNSVFELHKLLARPGAMEKVLSLVKEIKPEIVTVVEQEANHNGPVFLDRFTESLHYYSALFDSLEGSMNNQDKVMTEMYLGEQICNVVTCEGVDRVERHESLAHWRTRFDSAGFAPVHLGSNAFKQASMLLALFGSGDGYKVEENDGCLTLGWHSRPLIATSAWRVGDTH | 601 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1896382 | 1898521 | + | Conep06aG0039800.1 | Cone6ag0390 | 439274 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone6ag0390 | 601 | ProSiteProfiles | GRAS family profile. | 228 | 596 | IPR005202 | - | |
Cone6ag0390 | 601 | FunFam | DELLA protein GAI | 31 | 103 | - | - | |
Cone6ag0390 | 601 | Pfam | Transcriptional regulator DELLA protein N terminal | 33 | 106 | IPR021914 | - | |
Cone6ag0390 | 601 | Pfam | GRAS domain family | 237 | 596 | IPR005202 | - | |
Cone6ag0390 | 601 | PANTHER | OSJNBA0084A10.13 PROTEIN-RELATED | 201 | 595 | IPR005202 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER) | |
Cone6ag0390 | 601 | SMART | DELLA_2 | 33 | 113 | - | - | |
Cone6ag0390 | 601 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Cone6ag0390 | 601 | Gene3D | - | 31 | 103 | IPR038088 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag0412 | Cone-Chr17:1951971 | Cone6ag0390 | Cone-Chr6:1896382 | 5.69E-53 | dispersed | |
Cone19ag0747 | Cone-Chr19:6093751 | Cone6ag0390 | Cone-Chr6:1896382 | 5.69E-267 | dispersed | |
Cone20ag1000 | Cone-Chr20:7041116 | Cone6ag0390 | Cone-Chr6:1896382 | 2.69E-51 | dispersed | |
Cone2ag0028 | Cone-Chr2:167890 | Cone6ag0390 | Cone-Chr6:1896382 | 9.28E-90 | dispersed | |
Cone2ag0475 | Cone-Chr2:2552787 | Cone6ag0390 | Cone-Chr6:1896382 | 1.08E-197 | dispersed | |
Cone3ag1499 | Cone-Chr3:33579407 | Cone6ag0390 | Cone-Chr6:1896382 | 3.97E-61 | dispersed | |
Cone4ag0701 | Cone-Chr4:3628671 | Cone6ag0390 | Cone-Chr6:1896382 | 2.16E-156 | dispersed | |
Cone6ag0390 | Cone-Chr6:1896382 | Cone7ag0660 | Cone-Chr7:3486769 | 3.54E-152 | dispersed | |
Cone13ag0741 | Cone-Chr13:7068584 | Cone6ag0390 | Cone-Chr6:1896382 | 4.38E-264 | wgd | |
Cone16ag0528 | Cone-Chr16:7324283 | Cone6ag0390 | Cone-Chr6:1896382 | 1.61E-197 | wgd | |
Cone6ag0390 | Cone-Chr6:1896382 | Cone9ag0417 | Cone-Chr9:1924848 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46282 | PF00732 | GMC_oxred_N | 1.70E-64 | CL0063 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone6ag0390 | K14494 | - | rcu:8262526 | 781.171 |