Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0390 ATGAAAAGGGAACACTATCAACTGAATCTCCACCCTCAACCAGACGCTCCAGACCCCCCGCCGTCCATACCCGCTGGCTCTAGAGGCGGCGACATGGATGAGCTTTTGGCCGTTTTAGGTTACAAAGTTAGATCATCTGACATGGCCGAAGTTGCTCAGAAACTCGAGCAGCTGGAAGAAGTCATGATGGGGAATCATGATGTTCACGGCGGATATCAAGGGGTCGGCATCTCTCAGCTCGCTTCTGAAACTATCCATTACAATCCTTCTGATCTATCGACCTGGCTGGGGAGCATGATCTCGGAGCTCCATCCGGATCCCATTTTCGACCCGATTGTCTCTTCTCTGTCTCATCAGTCACAATCATCCATTGATTTCGCCGAATCTTCCACCATAACAACCTCCATGGATTTCGGTGCAGATCAGAACTACAAACCGCCGCCGCAGCAGCAGCACCAGAGTCAAGCAGTACTAGACTTCTCTTCTTCTTGCTCCGATTACGATCTCAAAGCTATTCCCGGTAAGGCTATTTATAGTAGTTCAGAAAACGCTGTTTCATCTAGGGAGAAGAAGCGGTTTAAACCTTCTTCTGGGTCGGAAAATAATTTCGACTGGATCTCTTGTTCTTCTTCTTCGACAACACCAACAACGACAAATACGGCGAGTCGTCCTGTTGTACTCGTTGACTCACAAGAAAACGGAATTCGACTCGTTCATACTCTAATGGCTTGCGCTGAAGCGGTTCAGCGCAACAATCTTAACCTAGCTGAGGCTCTTGTCAAGCAGATCGGATTCTTAGCGATTTCTCAAGCCGGAGCCATGGGGAAGGTGGCTACCTTCTTCGCCGAAGCATTAGCTCGTCGGATTCTTCGTCAATTTCCTCCAACTCCGCTTAATTACTCTCTCTCTAACATGCTTCAAATGCATTTCTACGAGAGCGCTCCTTACCTCAAATTCGCCCATTTCACTGCAAATCAAGCGATTCTAGAATCTTTTGAAGGGAAGAAACGCGTCCACGTTATCGATTTTTCGATCAACCAGGGGATGCAGTGGCCGGCTCTTATTCAAGCTCTAGCTCTCCGTCCGGGTGGTCCTCCGGCTTTCCGGTTGACCGGGATCGGACCTCCGGCTCCTGATAACTCCGATTACCTTCGGGAAGTTGGACGGAAGCTCGCTCAGCTGGCTGATACGGTTCACGTCGAGTTCGAGTACAGAGGCTTTGTTGCGAATAGCATAGCAGATCTCGACTCGTCCCTGCTTGATCTCGGACCGAATCACAACGAGTCGGTGGCGGTTAACTCGGTTTTCGAGTTGCATAAATTGTTGGCCCGGCCCGGAGCGATGGAGAAGGTCTTGTCTTTGGTGAAGGAGATTAAGCCGGAGATTGTTACCGTGGTTGAGCAGGAAGCGAACCACAACGGTCCTGTTTTTCTAGACCGGTTCACTGAGTCACTGCACTATTACTCGGCTCTGTTTGACTCGTTAGAAGGATCGATGAATAATCAGGACAAGGTCATGACGGAGATGTACTTAGGGGAGCAGATCTGTAACGTGGTGACTTGTGAAGGAGTGGACCGAGTGGAGCGGCACGAGTCTTTGGCTCACTGGCGGACGCGGTTCGACTCGGCGGGGTTCGCACCCGTTCACCTCGGGTCCAACGCGTTCAAGCAAGCCAGCATGTTACTGGCTTTGTTCGGAAGTGGAGATGGTTACAAGGTGGAAGAGAACGATGGGTGCTTGACGCTTGGCTGGCACAGCCGTCCACTCATAGCCACGTCTGCTTGGAGAGTCGGTGACACTCACTGA 1806 50.89 MKREHYQLNLHPQPDAPDPPPSIPAGSRGGDMDELLAVLGYKVRSSDMAEVAQKLEQLEEVMMGNHDVHGGYQGVGISQLASETIHYNPSDLSTWLGSMISELHPDPIFDPIVSSLSHQSQSSIDFAESSTITTSMDFGADQNYKPPPQQQHQSQAVLDFSSSCSDYDLKAIPGKAIYSSSENAVSSREKKRFKPSSGSENNFDWISCSSSSTTPTTTNTASRPVVLVDSQENGIRLVHTLMACAEAVQRNNLNLAEALVKQIGFLAISQAGAMGKVATFFAEALARRILRQFPPTPLNYSLSNMLQMHFYESAPYLKFAHFTANQAILESFEGKKRVHVIDFSINQGMQWPALIQALALRPGGPPAFRLTGIGPPAPDNSDYLREVGRKLAQLADTVHVEFEYRGFVANSIADLDSSLLDLGPNHNESVAVNSVFELHKLLARPGAMEKVLSLVKEIKPEIVTVVEQEANHNGPVFLDRFTESLHYYSALFDSLEGSMNNQDKVMTEMYLGEQICNVVTCEGVDRVERHESLAHWRTRFDSAGFAPVHLGSNAFKQASMLLALFGSGDGYKVEENDGCLTLGWHSRPLIATSAWRVGDTH 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1896382 1898521 + Conep06aG0039800.1 Cone6ag0390 439274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0390 601 ProSiteProfiles GRAS family profile. 228 596 IPR005202 -
Cone6ag0390 601 FunFam DELLA protein GAI 31 103 - -
Cone6ag0390 601 Pfam Transcriptional regulator DELLA protein N terminal 33 106 IPR021914 -
Cone6ag0390 601 Pfam GRAS domain family 237 596 IPR005202 -
Cone6ag0390 601 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 201 595 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Cone6ag0390 601 SMART DELLA_2 33 113 - -
Cone6ag0390 601 MobiDBLite consensus disorder prediction 1 30 - -
Cone6ag0390 601 Gene3D - 31 103 IPR038088 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0412 Cone-Chr17:1951971 Cone6ag0390 Cone-Chr6:1896382 5.69E-53 dispersed
Cone19ag0747 Cone-Chr19:6093751 Cone6ag0390 Cone-Chr6:1896382 5.69E-267 dispersed
Cone20ag1000 Cone-Chr20:7041116 Cone6ag0390 Cone-Chr6:1896382 2.69E-51 dispersed
Cone2ag0028 Cone-Chr2:167890 Cone6ag0390 Cone-Chr6:1896382 9.28E-90 dispersed
Cone2ag0475 Cone-Chr2:2552787 Cone6ag0390 Cone-Chr6:1896382 1.08E-197 dispersed
Cone3ag1499 Cone-Chr3:33579407 Cone6ag0390 Cone-Chr6:1896382 3.97E-61 dispersed
Cone4ag0701 Cone-Chr4:3628671 Cone6ag0390 Cone-Chr6:1896382 2.16E-156 dispersed
Cone6ag0390 Cone-Chr6:1896382 Cone7ag0660 Cone-Chr7:3486769 3.54E-152 dispersed
Cone13ag0741 Cone-Chr13:7068584 Cone6ag0390 Cone-Chr6:1896382 4.38E-264 wgd
Cone16ag0528 Cone-Chr16:7324283 Cone6ag0390 Cone-Chr6:1896382 1.61E-197 wgd
Cone6ag0390 Cone-Chr6:1896382 Cone9ag0417 Cone-Chr9:1924848 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46282 PF00732 GMC_oxred_N 1.70E-64 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0390 K14494 - rcu:8262526 781.171