Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0412 ATGTCTGCTTTTGCTTCATCTCCTTCTCTTCCTAATTCTTCTGGTGATCAAAGAGGTGGAGTGAGAGACTTAGACATAAATCAAGTACCAGTAGTAGAAGAAGATGAATGGATTACAGGAAGCATGGAAGATGAAGAAGAAAGCAGCATCAATGGAGGATCTGAACCTCCACGGAAAAAACTCCGTCTCACAAATGAACAATCTCGCCTCCTCGAGGAAAGCTTCAAACAAAACCACACCTTGAATCCTAAGCAGAAAGAGGGTTTGGCTGTACAGTTAAAGTTGAAGATCCGACAAGTTGAGGTGTGGTTCCAGAACCGTAGGGCCAGGAGCAAATTGAAGCAGACGGAGATGGAATGTGAGGACTTAAAGAGGTGGTTCGGGTCACTTGCGGAACAGAACAGGAGGCTACAGAAGGAAGTGGAAGAGCTAAGGGGATTCAACGAGAAGGTGGGCCACCCCACCGCGATCTCGCCGCACGGCGGTGAGCCTCTCCCAGCTTCAACCCTCTCCATGTGTCCTCGCTGTGAAAGAGTGACCAGGTTCACCGTGTAA 555 48.65 MSAFASSPSLPNSSGDQRGGVRDLDINQVPVVEEDEWITGSMEDEEESSINGGSEPPRKKLRLTNEQSRLLEESFKQNHTLNPKQKEGLAVQLKLKIRQVEVWFQNRRARSKLKQTEMECEDLKRWFGSLAEQNRRLQKEVEELRGFNEKVGHPTAISPHGGEPLPASTLSMCPRCERVTRFTV 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1989040 1990880 - Conep06aG0042200.1 Cone6ag0412 439296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0412 184 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone6ag0412 184 Gene3D - 50 121 - -
Cone6ag0412 184 MobiDBLite consensus disorder prediction 1 16 - -
Cone6ag0412 184 MobiDBLite consensus disorder prediction 1 61 - -
Cone6ag0412 184 SUPERFAMILY Homeodomain-like 44 115 IPR009057 -
Cone6ag0412 184 FunFam Homeobox-leucine zipper protein 18 43 119 - -
Cone6ag0412 184 SMART HOX_1 56 118 IPR001356 GO:0003677(InterPro)
Cone6ag0412 184 Pfam Homeodomain 58 112 IPR001356 GO:0003677(InterPro)
Cone6ag0412 184 Coils Coil 130 150 - -
Cone6ag0412 184 Pfam Homeobox associated leucine zipper 114 145 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0412 184 CDD homeodomain 57 115 IPR001356 GO:0003677(InterPro)
Cone6ag0412 184 SMART halz 114 159 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0412 184 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677(InterPro)
Cone6ag0412 184 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 41 181 IPR050762 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0412 Cone-Chr6:1989040 Cone6ag1484 Cone-Chr6:11792840 7.94E-42 dispersed
Cone6ag0412 Cone-Chr6:1989040 Cone9ag0435 Cone-Chr9:2006434 9.91E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46284 PF01602 Adaptin_N 4.60E-33 CL0020 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0412 K09338 - vvi:100257750 271.166