Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0423 ATGGTCTCTGAAAATGAGGCTGCCTTTGCTTCTACTTCATCAGATGCTACCGTTCACATATGGGATGTGGCTTTTCCATCCACTTACGAAGGCGATCCTAAGTTAATGTTTGTGGAATCTCTCTCTATTGGCCCAAAATCTATGGTTGCACTTTCATTAGCGGAATTTCCTGAAAATACAGGCCACATAGTCTTGGCAGTGGGTGGATTAGACAACAAAATCCATCTATATTGCGGAAAAAGGACAGGAAAATTTTTCCGTGCATGTGAGTTAAAAGGACATACAGATTGGATTGGAAGCTTGGACTTCTCATTACCAATAAACAATGAAGCACATAGTCTTTTTCTTGTAAGTTCATCTCAAGACAGAGGAATACGTATATGGAAGATGGCTCTACGCGATTCACAAGCCGATAAGGAAATAAGTTTAGCATCATATATTGAAGGGTTTTATGGCGGCCATTGGAGCCCAGATGGAGATTCAATATTGGCACATGGATATGGTGGATCCTTCCATCTTTGGAAAAATATTGGGGGCAATTCAGGTAACTGGCAACCACAGAAAGTTCCTTCTGGGCACTTCGCTGCTGTAACAGATATTTCTTGGGCTAGATCTGGTGATTACATGCTTTCAGTTAGTCATGACCAGACTAGTCGAATTTTCACTCCATGGAAGAATGAAGCTTCTGTTAGTGGCGGGTGCTCTTGGCATGAAATAGCTCGTCCCCAAGTTCATGGTCATTATATCAATTGTGTTACCATTATCCAAGGAAAAGGAAGCCATCGTTTTGTGAGTGGAGCCGAAGAGAAAGTTGCCCGAGTTTCTGAAGCTCCTCTATCTTTTCTCAAGACATTGAATCATGCCATTACTCACCAGAATTCCATTTTCGAAGATCTTCAGACAGATGTTCAGATCTTGGGTGCAAACATGTCAGCCCTTGGCCAATCTCAGAAACCCATACACATTCATACTTCCTGTGAGACATCTGATAGAAGTGGGGTTGAGGGTGGTTTTGACACCATTGAAACTGTTCCTGAGGAAATTCCAGCGCAATCAATGGCAGTAGCTGAAATATGGCTTTGGCAAGTTGGTTCAAGGAAGGCAGCTGGTAGACTGCAGTCTCACAGCTTAACAGTGACCCAAATGGAATTCTTTCATGATGATGATTTACTTTTGGCCGTCTCTAGAGATCGCCACTTCGCTGTTTTTAAGATCCAAAGAACAGGTGGGGATAAGATTAACTATGAACTTCTATCAAGGCGAGAGGCACACAAAAGAATCATAAGGGCATGTTCTTGGAACCCATATGGACGGGAATTTGCAACAGGATCTAGGGACAAAACTGTAAAAATATGGGCCGTGACAACAGAATCTTCAGTTAAGAAAATTACCACTTTGCCTCCATTCAACAGTAGCATCACGGCCTTATCTTGGACGGGTATTGATCGGGCAATAAATTATGGGTTTCTAGCCGTTGGGATGGAAAATGGTCTGATTGAACTATGGAGTCTCTGTCCAAAGAAAACAGATAACAATGTAGAGGCTGCTATGTTTGTCCGGTTTGACCCGTTCATGTGTCGTGTTTCTACAGTCAACCGTTTGACTTGGAGGAAGAGCGACTATAGCGAAGATGGTGGGAAAGCTAAGATTGCTTCTTGTGGAGCCGATCAATGTGCGAGATTGTTGGAGGTAAGTAATATTATTAATTAA 1710 42.46 MVSENEAAFASTSSDATVHIWDVAFPSTYEGDPKLMFVESLSIGPKSMVALSLAEFPENTGHIVLAVGGLDNKIHLYCGKRTGKFFRACELKGHTDWIGSLDFSLPINNEAHSLFLVSSSQDRGIRIWKMALRDSQADKEISLASYIEGFYGGHWSPDGDSILAHGYGGSFHLWKNIGGNSGNWQPQKVPSGHFAAVTDISWARSGDYMLSVSHDQTSRIFTPWKNEASVSGGCSWHEIARPQVHGHYINCVTIIQGKGSHRFVSGAEEKVARVSEAPLSFLKTLNHAITHQNSIFEDLQTDVQILGANMSALGQSQKPIHIHTSCETSDRSGVEGGFDTIETVPEEIPAQSMAVAEIWLWQVGSRKAAGRLQSHSLTVTQMEFFHDDDLLLAVSRDRHFAVFKIQRTGGDKINYELLSRREAHKRIIRACSWNPYGREFATGSRDKTVKIWAVTTESSVKKITTLPPFNSSITALSWTGIDRAINYGFLAVGMENGLIELWSLCPKKTDNNVEAAMFVRFDPFMCRVSTVNRLTWRKSDYSEDGGKAKIASCGADQCARLLEVSNIIN 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2055320 2058888 - Conep06aG0043300.1 Cone6ag0423 439307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0423 569 ProSiteProfiles Trp-Asp (WD) repeats profile. 1 23 IPR001680 GO:0005515(InterPro)
Cone6ag0423 569 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 421 456 - -
Cone6ag0423 569 ProSiteProfiles Trp-Asp (WD) repeats profile. 91 130 IPR001680 GO:0005515(InterPro)
Cone6ag0423 569 SMART WD40_4 183 222 IPR001680 GO:0005515(InterPro)
Cone6ag0423 569 SMART WD40_4 365 404 IPR001680 GO:0005515(InterPro)
Cone6ag0423 569 SMART WD40_4 235 276 IPR001680 GO:0005515(InterPro)
Cone6ag0423 569 SMART WD40_4 414 453 IPR001680 GO:0005515(InterPro)
Cone6ag0423 569 SMART WD40_4 459 503 IPR001680 GO:0005515(InterPro)
Cone6ag0423 569 SMART WD40_4 84 129 IPR001680 GO:0005515(InterPro)
Cone6ag0423 569 PRINTS G protein beta WD-40 repeat signature 440 454 IPR020472 -
Cone6ag0423 569 PRINTS G protein beta WD-40 repeat signature 116 130 IPR020472 -
Cone6ag0423 569 PRINTS G protein beta WD-40 repeat signature 9 23 IPR020472 -
Cone6ag0423 569 ProSiteProfiles Trp-Asp (WD) repeats profile. 421 462 IPR001680 GO:0005515(InterPro)
Cone6ag0423 569 Gene3D - 350 567 IPR015943 GO:0005515(InterPro)
Cone6ag0423 569 Gene3D - 182 296 IPR015943 GO:0005515(InterPro)
Cone6ag0423 569 Gene3D - 2 181 IPR015943 GO:0005515(InterPro)
Cone6ag0423 569 Pfam WD domain, G-beta repeat 90 128 IPR001680 GO:0005515(InterPro)
Cone6ag0423 569 Pfam WD domain, G-beta repeat 185 221 IPR001680 GO:0005515(InterPro)
Cone6ag0423 569 Pfam WD domain, G-beta repeat 419 452 IPR001680 GO:0005515(InterPro)
Cone6ag0423 569 PANTHER ELONGATOR COMPLEX PROTEIN 2 147 347 IPR037289 GO:0002098(InterPro)|GO:0033588(InterPro)
Cone6ag0423 569 SUPERFAMILY Putative isomerase YbhE 65 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0423 K11374 - - csv:101209018 598.971
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0423 Cone-Chr6:2055320 Cone9ag0445 Cone-Chr9:2061289 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g358 . . . . . . Bma14g01910 . . Cmo18g01004 . Cma18g00995 . Car18g00918 Sed06g1949 Cpe09g00322 Cpe01g01327 Bhi07g01286 Tan04g0812 Cmetu10g0150 Lac13g0532 Hepe01g1164 . . Cla05g02273 Cam05g2443 Cec05g2464 Cco05g2508 Clacu05g2438 Cmu05g2301 Cre05g2419 . . Cone6ag0423 Cone9ag0445 Lsi04g00222 Csa05g02643 Chy10g01176 Cme10g00228 . . Bda07g01725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011732 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 30