Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0432 ATGAAACAGTTTAAGATCAAAGTGTTCCTAAACGAATTGCCTACTCTTATTACAAGAGAGAAAACTGTTCGAATCAAAACCACCATTATGATTTCTCTTTCATTGTCAATTTTTGTCATCATTCTTGGAGTATTCGTCAATGATCAAATAAAGAAGTTTCTAAACTCGGATGAGAATTACTACTACTATTCCCCTTATCATCATCACGATCAACTTCACACCACCAAGTACATTTCTCCTCCTTCACATCATAAACATCAACCAGCTCCGATATTACTACAACATTCACATGATCTTCCCTGCAATTTCTCACCATCATCACCTTCAGTTTTGTTCATTGATTGGATAGTTCCCAAGAAGATATGGCACTCCATGAGCGACGAGGAGCTAATGTGGAGAGCTTCTATGGATCCTCAAATTAGGGCATACCCTTATGATCGGACTCCAAAATTAGCATTTATGTTCTTAAGTAGAGGGAAACTGCCTTTGGTACCACTTTGGGAAATGTTCTTCAAGGGACATCAAGGGCTTTATTCTATCTACCTTCACACTTCGTTTGAGTTTGATGATCACGAGGAATCGCCCATCACTTCTGTGTTTTACAAGCGTCGAATACCAAGTAAGGCAGTTGAATGGGGAAGATCGACAATGATCGATGCAGAAAGAAGACTGTTAGCAAATGCCCTACTTGATTTCTCAAACGAGAGATTCATTTTGCTCTCAGAATCATGCATTCCTTTATTCAACTTCACTACAGTGTACAACTACCTTATCAACTCCAACCATAGTTTTGTCGGTTCATTCGACGACCCGAGGCCCATGGGCCGTGGGCGCTACAACAAGAGAATGCGGCCCACAGTGTCATTGTCCGATTGGCGTAAAGGCAACCAATGGTTCGAAGTCAGTCGCAACATCGCCGTCAACATAGTTTCGGACAGGACATACTACAATGTTTTTAAAGAGCATTGCAAGCCTCCATGCTACATGGACGAGCACTACATAGCAACACTTGTGACCAAGATTTTTCCGGATTTGAACTCTAATAGGACTATTACTTGGGTCGATTGGTCTAGAGGTGGTTCGCACCCTACTCGGTTTGTGAAGAAGGATGTGTCGGAAGGGTTCTTGAATAGGATAAGGAATGGGTTTAACTGTAGTTATAATGGTGAAGTGACCACCATTTGCTTCCTTTTTGCTAGGAAATTTCATCCCAACACCTTGGTGCCCTTGCTAAAGTTACCTCCGAGTGCGCTTCAATTTTAG 1263 41.73 MKQFKIKVFLNELPTLITREKTVRIKTTIMISLSLSIFVIILGVFVNDQIKKFLNSDENYYYYSPYHHHDQLHTTKYISPPSHHKHQPAPILLQHSHDLPCNFSPSSPSVLFIDWIVPKKIWHSMSDEELMWRASMDPQIRAYPYDRTPKLAFMFLSRGKLPLVPLWEMFFKGHQGLYSIYLHTSFEFDDHEESPITSVFYKRRIPSKAVEWGRSTMIDAERRLLANALLDFSNERFILLSESCIPLFNFTTVYNYLINSNHSFVGSFDDPRPMGRGRYNKRMRPTVSLSDWRKGNQWFEVSRNIAVNIVSDRTYYNVFKEHCKPPCYMDEHYIATLVTKIFPDLNSNRTITWVDWSRGGSHPTRFVKKDVSEGFLNRIRNGFNCSYNGEVTTICFLFARKFHPNTLVPLLKLPPSALQF 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2093899 2095268 - Conep06aG0044200.1 Cone6ag0432 439316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0432 420 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 52 413 IPR044174 GO:0016757(InterPro)
Cone6ag0432 420 Pfam Core-2/I-Branching enzyme 151 380 IPR003406 GO:0016020(InterPro)|GO:0016757(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0432 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0309 Cone-Chr11:1506430 Cone6ag0432 Cone-Chr6:2093899 1.09E-122 dispersed
Cone16ag0312 Cone-Chr16:3696017 Cone6ag0432 Cone-Chr6:2093899 9.20E-74 dispersed
Cone18ag1186 Cone-Chr18:8488988 Cone6ag0432 Cone-Chr6:2093899 4.01E-123 dispersed
Cone1ag0756 Cone-Chr1:42186754 Cone6ag0432 Cone-Chr6:2093899 9.75E-129 dispersed
Cone6ag0432 Cone-Chr6:2093899 Cone7ag1199 Cone-Chr7:8921086 7.71E-123 dispersed
Cone6ag0431 Cone-Chr6:2091928 Cone6ag0432 Cone-Chr6:2093899 1.77E-50 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g338 Blo01g00507 . Bda01g02064 Bda11g00105 Bpe13g01106 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0819 Cone6ag0432 . . . . . . . . Bda11g00105 . Bpe02g02071 Bma01g00390 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002679 1 2 1 1 1 2 2 2 2 2 1 2 0 2 2 2 2 6 2 2 2 3 2 2 2 1 2 2 2 3 58